Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03100 and HSERO_RS03105 are separated by 117 nucleotides HSERO_RS03105 and HSERO_RS03110 overlap by 4 nucleotides HSERO_RS03110 and HSERO_RS03115 are separated by 31 nucleotides
HSERO_RS03100: HSERO_RS03100 - chemotaxis protein CheY, at 678,819 to 679,187
_RS03100
HSERO_RS03105: HSERO_RS03105 - anti-sigma factor antagonist, at 679,305 to 679,613
_RS03105
HSERO_RS03110: HSERO_RS03110 - chemotaxis protein CheA, at 679,610 to 681,787
_RS03110
HSERO_RS03115: HSERO_RS03115 - methyl-accepting chemotaxis protein, at 681,819 to 683,606
_RS03115
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 678.650 kb on + strand at 678.929 kb on + strand, within HSERO_RS03100 at 678.938 kb on - strand, within HSERO_RS03100 at 678.999 kb on + strand, within HSERO_RS03100 at 678.999 kb on + strand, within HSERO_RS03100 at 679.105 kb on - strand, within HSERO_RS03100 at 679.125 kb on + strand, within HSERO_RS03100 at 679.133 kb on - strand, within HSERO_RS03100 at 679.209 kb on - strand at 679.212 kb on + strand at 679.215 kb on - strand at 679.235 kb on - strand at 679.240 kb on + strand at 679.243 kb on - strand at 679.243 kb on - strand at 679.258 kb on + strand at 679.263 kb on + strand at 679.268 kb on + strand at 679.271 kb on - strand at 679.398 kb on - strand, within HSERO_RS03105 at 679.398 kb on - strand, within HSERO_RS03105 at 679.448 kb on - strand, within HSERO_RS03105 at 679.462 kb on - strand, within HSERO_RS03105 at 679.564 kb on + strand, within HSERO_RS03105 at 679.692 kb on - strand at 679.832 kb on + strand, within HSERO_RS03110 at 679.850 kb on - strand, within HSERO_RS03110 at 680.020 kb on + strand, within HSERO_RS03110 at 680.024 kb on + strand, within HSERO_RS03110 at 680.296 kb on + strand, within HSERO_RS03110 at 680.391 kb on - strand, within HSERO_RS03110 at 680.631 kb on - strand, within HSERO_RS03110 at 680.896 kb on + strand, within HSERO_RS03110 at 681.012 kb on - strand, within HSERO_RS03110 at 681.106 kb on - strand, within HSERO_RS03110 at 681.380 kb on - strand, within HSERO_RS03110 at 681.400 kb on - strand, within HSERO_RS03110 at 681.452 kb on - strand, within HSERO_RS03110 at 681.734 kb on + strand at 681.742 kb on - strand at 681.809 kb on - strand at 681.981 kb on + strand at 681.988 kb on + strand at 681.994 kb on - strand at 682.258 kb on + strand, within HSERO_RS03115 at 682.338 kb on + strand, within HSERO_RS03115 at 682.338 kb on + strand, within HSERO_RS03115 at 682.424 kb on + strand, within HSERO_RS03115 at 682.430 kb on - strand, within HSERO_RS03115 at 682.531 kb on - strand, within HSERO_RS03115 at 682.679 kb on + strand, within HSERO_RS03115
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 678,650 + -0.7 678,929 + HSERO_RS03100 0.30 -1.7 678,938 - HSERO_RS03100 0.32 +1.0 678,999 + HSERO_RS03100 0.49 -1.0 678,999 + HSERO_RS03100 0.49 -0.7 679,105 - HSERO_RS03100 0.78 +0.0 679,125 + HSERO_RS03100 0.83 -0.1 679,133 - HSERO_RS03100 0.85 +0.0 679,209 - -0.7 679,212 + +0.5 679,215 - +1.3 679,235 - +0.1 679,240 + -1.9 679,243 - -0.1 679,243 - +0.2 679,258 + -0.4 679,263 + +0.8 679,268 + -1.3 679,271 - +0.9 679,398 - HSERO_RS03105 0.30 +1.1 679,398 - HSERO_RS03105 0.30 +2.0 679,448 - HSERO_RS03105 0.46 +1.2 679,462 - HSERO_RS03105 0.51 +1.7 679,564 + HSERO_RS03105 0.84 +1.0 679,692 - +1.4 679,832 + HSERO_RS03110 0.10 +1.8 679,850 - HSERO_RS03110 0.11 +1.5 680,020 + HSERO_RS03110 0.19 +2.0 680,024 + HSERO_RS03110 0.19 +2.7 680,296 + HSERO_RS03110 0.31 +1.2 680,391 - HSERO_RS03110 0.36 +1.2 680,631 - HSERO_RS03110 0.47 +1.6 680,896 + HSERO_RS03110 0.59 +0.3 681,012 - HSERO_RS03110 0.64 +0.5 681,106 - HSERO_RS03110 0.69 +1.2 681,380 - HSERO_RS03110 0.81 +1.1 681,400 - HSERO_RS03110 0.82 +1.4 681,452 - HSERO_RS03110 0.85 +1.4 681,734 + +1.0 681,742 - +1.2 681,809 - -0.7 681,981 + +0.6 681,988 + +0.8 681,994 - +0.2 682,258 + HSERO_RS03115 0.25 +0.4 682,338 + HSERO_RS03115 0.29 -0.0 682,338 + HSERO_RS03115 0.29 +0.0 682,424 + HSERO_RS03115 0.34 -0.3 682,430 - HSERO_RS03115 0.34 +0.4 682,531 - HSERO_RS03115 0.40 +0.8 682,679 + HSERO_RS03115 0.48 -0.3
Or see this region's nucleotide sequence