Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02835 and HSERO_RS02840 are separated by 66 nucleotides HSERO_RS02840 and HSERO_RS02845 are separated by 105 nucleotides HSERO_RS02845 and HSERO_RS02850 are separated by 128 nucleotides
HSERO_RS02835: HSERO_RS02835 - FMN-dependent NADH-azoreductase, at 622,015 to 622,632
_RS02835
HSERO_RS02840: HSERO_RS02840 - polyketide synthase, at 622,699 to 623,343
_RS02840
HSERO_RS02845: HSERO_RS02845 - amidohydrolase, at 623,449 to 625,026
_RS02845
HSERO_RS02850: HSERO_RS02850 - glutamyl-tRNA(Gln) amidotransferase, at 625,155 to 627,110
_RS02850
Position (kb) 623
624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 622.473 kb on - strand, within HSERO_RS02835 at 622.497 kb on - strand, within HSERO_RS02835 at 622.508 kb on + strand, within HSERO_RS02835 at 622.513 kb on + strand, within HSERO_RS02835 at 622.546 kb on - strand, within HSERO_RS02835 at 622.547 kb on + strand, within HSERO_RS02835 at 622.713 kb on + strand at 622.723 kb on + strand at 622.723 kb on + strand at 622.979 kb on - strand, within HSERO_RS02840 at 623.025 kb on - strand, within HSERO_RS02840 at 623.037 kb on + strand, within HSERO_RS02840 at 623.041 kb on - strand, within HSERO_RS02840 at 623.151 kb on - strand, within HSERO_RS02840 at 623.151 kb on - strand, within HSERO_RS02840 at 623.151 kb on - strand, within HSERO_RS02840 at 623.151 kb on - strand, within HSERO_RS02840 at 623.168 kb on + strand, within HSERO_RS02840 at 623.208 kb on + strand, within HSERO_RS02840 at 623.208 kb on + strand, within HSERO_RS02840 at 623.208 kb on + strand, within HSERO_RS02840 at 623.216 kb on - strand, within HSERO_RS02840 at 623.265 kb on + strand, within HSERO_RS02840 at 623.314 kb on + strand at 623.401 kb on - strand at 623.462 kb on - strand at 623.472 kb on + strand at 623.551 kb on - strand at 623.559 kb on + strand at 623.730 kb on + strand, within HSERO_RS02845 at 623.931 kb on + strand, within HSERO_RS02845 at 623.936 kb on + strand, within HSERO_RS02845 at 623.936 kb on + strand, within HSERO_RS02845 at 624.060 kb on - strand, within HSERO_RS02845 at 624.127 kb on - strand, within HSERO_RS02845 at 624.246 kb on - strand, within HSERO_RS02845 at 624.419 kb on + strand, within HSERO_RS02845 at 624.445 kb on + strand, within HSERO_RS02845 at 624.455 kb on + strand, within HSERO_RS02845 at 624.455 kb on + strand, within HSERO_RS02845 at 624.455 kb on + strand, within HSERO_RS02845 at 624.455 kb on + strand, within HSERO_RS02845 at 624.460 kb on + strand, within HSERO_RS02845 at 624.463 kb on - strand, within HSERO_RS02845 at 624.623 kb on - strand, within HSERO_RS02845 at 625.001 kb on - strand at 625.103 kb on + strand at 625.194 kb on - strand at 625.287 kb on + strand at 625.287 kb on + strand at 625.293 kb on - strand at 625.444 kb on - strand, within HSERO_RS02850 at 625.488 kb on - strand, within HSERO_RS02850 at 625.538 kb on - strand, within HSERO_RS02850 at 625.565 kb on - strand, within HSERO_RS02850 at 625.592 kb on - strand, within HSERO_RS02850 at 625.646 kb on + strand, within HSERO_RS02850 at 625.716 kb on + strand, within HSERO_RS02850 at 625.731 kb on + strand, within HSERO_RS02850 at 625.890 kb on - strand at 625.911 kb on - strand, within HSERO_RS02850 at 625.965 kb on + strand, within HSERO_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 622,473 - HSERO_RS02835 0.74 -0.3 622,497 - HSERO_RS02835 0.78 -0.3 622,508 + HSERO_RS02835 0.80 +0.4 622,513 + HSERO_RS02835 0.81 -0.3 622,546 - HSERO_RS02835 0.86 -1.0 622,547 + HSERO_RS02835 0.86 -2.0 622,713 + -1.2 622,723 + -1.7 622,723 + -0.8 622,979 - HSERO_RS02840 0.43 -0.0 623,025 - HSERO_RS02840 0.51 -0.6 623,037 + HSERO_RS02840 0.52 +0.3 623,041 - HSERO_RS02840 0.53 +0.5 623,151 - HSERO_RS02840 0.70 +0.8 623,151 - HSERO_RS02840 0.70 -0.0 623,151 - HSERO_RS02840 0.70 -0.5 623,151 - HSERO_RS02840 0.70 -0.3 623,168 + HSERO_RS02840 0.73 -0.1 623,208 + HSERO_RS02840 0.79 +0.6 623,208 + HSERO_RS02840 0.79 -0.0 623,208 + HSERO_RS02840 0.79 +0.4 623,216 - HSERO_RS02840 0.80 -0.0 623,265 + HSERO_RS02840 0.88 +0.2 623,314 + -0.0 623,401 - +1.4 623,462 - -0.6 623,472 + -0.1 623,551 - +0.4 623,559 + -0.7 623,730 + HSERO_RS02845 0.18 +0.5 623,931 + HSERO_RS02845 0.31 -0.2 623,936 + HSERO_RS02845 0.31 -0.2 623,936 + HSERO_RS02845 0.31 +0.2 624,060 - HSERO_RS02845 0.39 +0.3 624,127 - HSERO_RS02845 0.43 -0.0 624,246 - HSERO_RS02845 0.51 -0.3 624,419 + HSERO_RS02845 0.61 +0.9 624,445 + HSERO_RS02845 0.63 +0.4 624,455 + HSERO_RS02845 0.64 +2.7 624,455 + HSERO_RS02845 0.64 +0.5 624,455 + HSERO_RS02845 0.64 +0.8 624,455 + HSERO_RS02845 0.64 +0.9 624,460 + HSERO_RS02845 0.64 -0.4 624,463 - HSERO_RS02845 0.64 +0.6 624,623 - HSERO_RS02845 0.74 +0.1 625,001 - -0.3 625,103 + -0.5 625,194 - +0.7 625,287 + -0.5 625,287 + -1.1 625,293 - -0.3 625,444 - HSERO_RS02850 0.15 -0.1 625,488 - HSERO_RS02850 0.17 +0.0 625,538 - HSERO_RS02850 0.20 -0.3 625,565 - HSERO_RS02850 0.21 -0.6 625,592 - HSERO_RS02850 0.22 -0.3 625,646 + HSERO_RS02850 0.25 +0.2 625,716 + HSERO_RS02850 0.29 +0.1 625,731 + HSERO_RS02850 0.29 -0.8 625,890 - -0.9 625,911 - HSERO_RS02850 0.39 +0.1 625,965 + HSERO_RS02850 0.41 +0.6
Or see this region's nucleotide sequence