Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02415

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02410 and HSERO_RS02415 are separated by 11 nucleotidesHSERO_RS02415 and HSERO_RS02420 are separated by 611 nucleotides HSERO_RS02410: HSERO_RS02410 - acriflavine resistance protein B, at 526,934 to 530,080 _RS02410 HSERO_RS02415: HSERO_RS02415 - hemolysin D, at 530,092 to 531,300 _RS02415 HSERO_RS02420: HSERO_RS02420 - TetR family transcriptional regulator, at 531,912 to 532,547 _RS02420 Position (kb) 530 531 532Strain fitness (log2 ratio) -1 0 1 2at 529.141 kb on - strand, within HSERO_RS02410at 529.272 kb on + strand, within HSERO_RS02410at 529.356 kb on - strand, within HSERO_RS02410at 529.383 kb on - strand, within HSERO_RS02410at 529.491 kb on - strand, within HSERO_RS02410at 529.637 kb on - strand, within HSERO_RS02410at 529.762 kb on - strand, within HSERO_RS02410at 529.762 kb on - strand, within HSERO_RS02410at 529.795 kb on - strandat 529.809 kb on - strandat 529.856 kb on - strandat 530.053 kb on - strandat 530.193 kb on + strandat 530.321 kb on + strand, within HSERO_RS02415at 530.424 kb on + strand, within HSERO_RS02415at 530.429 kb on - strand, within HSERO_RS02415at 530.455 kb on - strand, within HSERO_RS02415at 530.499 kb on - strand, within HSERO_RS02415at 530.594 kb on + strand, within HSERO_RS02415at 530.602 kb on - strand, within HSERO_RS02415at 530.612 kb on + strand, within HSERO_RS02415at 530.637 kb on + strand, within HSERO_RS02415at 530.647 kb on + strand, within HSERO_RS02415at 530.655 kb on - strand, within HSERO_RS02415at 530.689 kb on - strand, within HSERO_RS02415at 530.749 kb on + strand, within HSERO_RS02415at 530.791 kb on - strandat 530.892 kb on - strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 530.996 kb on + strand, within HSERO_RS02415at 531.004 kb on - strand, within HSERO_RS02415at 531.004 kb on - strand, within HSERO_RS02415at 531.055 kb on - strand, within HSERO_RS02415at 531.120 kb on + strand, within HSERO_RS02415at 531.127 kb on - strand, within HSERO_RS02415at 531.146 kb on - strand, within HSERO_RS02415at 531.236 kb on - strandat 531.271 kb on - strandat 531.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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529,141 - HSERO_RS02410 0.70 +0.6
529,272 + HSERO_RS02410 0.74 +0.4
529,356 - HSERO_RS02410 0.77 +0.5
529,383 - HSERO_RS02410 0.78 +0.9
529,491 - HSERO_RS02410 0.81 +0.8
529,637 - HSERO_RS02410 0.86 +0.5
529,762 - HSERO_RS02410 0.90 +0.7
529,762 - HSERO_RS02410 0.90 +1.2
529,795 - -0.2
529,809 - +0.7
529,856 - +0.5
530,053 - +0.7
530,193 + +1.0
530,321 + HSERO_RS02415 0.19 +0.2
530,424 + HSERO_RS02415 0.27 -0.5
530,429 - HSERO_RS02415 0.28 +2.3
530,455 - HSERO_RS02415 0.30 +0.8
530,499 - HSERO_RS02415 0.34 +0.5
530,594 + HSERO_RS02415 0.42 +0.8
530,602 - HSERO_RS02415 0.42 -0.7
530,612 + HSERO_RS02415 0.43 +0.6
530,637 + HSERO_RS02415 0.45 +1.0
530,647 + HSERO_RS02415 0.46 +0.7
530,655 - HSERO_RS02415 0.47 +2.1
530,689 - HSERO_RS02415 0.49 -0.3
530,749 + HSERO_RS02415 0.54 +0.6
530,791 - +1.6
530,892 - HSERO_RS02415 0.66 +0.7
530,996 + HSERO_RS02415 0.75 +0.4
530,996 + HSERO_RS02415 0.75 +0.6
530,996 + HSERO_RS02415 0.75 +0.5
530,996 + HSERO_RS02415 0.75 +0.6
530,996 + HSERO_RS02415 0.75 +0.4
530,996 + HSERO_RS02415 0.75 +0.8
531,004 - HSERO_RS02415 0.75 +0.2
531,004 - HSERO_RS02415 0.75 +0.6
531,055 - HSERO_RS02415 0.80 +0.6
531,120 + HSERO_RS02415 0.85 +0.7
531,127 - HSERO_RS02415 0.86 +1.2
531,146 - HSERO_RS02415 0.87 +0.0
531,236 - +0.6
531,271 - -0.0
531,357 + +0.3

Or see this region's nucleotide sequence