Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02395 and HSERO_RS02400 are separated by 126 nucleotides HSERO_RS02400 and HSERO_RS02405 are separated by 619 nucleotides HSERO_RS02405 and HSERO_RS02410 are separated by 2 nucleotides
HSERO_RS02395: HSERO_RS02395 - 23S ribosomal RNA, at 521,732 to 524,621
_RS02395
HSERO_RS02400: HSERO_RS02400 - 5S ribosomal RNA, at 524,748 to 524,860
_RS02400
HSERO_RS02405: HSERO_RS02405 - multidrug transporter, at 525,480 to 526,931
_RS02405
HSERO_RS02410: HSERO_RS02410 - acriflavine resistance protein B, at 526,934 to 530,080
_RS02410
Position (kb) 525
526
527 Strain fitness (log2 ratio) -1
0
1
2 at 525.195 kb on + strand at 525.336 kb on + strand at 525.393 kb on - strand at 525.393 kb on - strand at 525.540 kb on - strand at 525.587 kb on - strand at 525.831 kb on + strand, within HSERO_RS02405 at 525.918 kb on - strand, within HSERO_RS02405 at 526.263 kb on + strand, within HSERO_RS02405 at 526.323 kb on + strand, within HSERO_RS02405 at 526.344 kb on - strand, within HSERO_RS02405 at 526.359 kb on - strand, within HSERO_RS02405 at 526.359 kb on - strand, within HSERO_RS02405 at 526.872 kb on + strand at 526.984 kb on + strand at 527.231 kb on - strand at 527.324 kb on - strand, within HSERO_RS02410 at 527.351 kb on + strand, within HSERO_RS02410 at 527.766 kb on + strand, within HSERO_RS02410 at 527.897 kb on - strand, within HSERO_RS02410
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 525,195 + -0.9 525,336 + +2.0 525,393 - +0.9 525,393 - -0.3 525,540 - +0.1 525,587 - +0.6 525,831 + HSERO_RS02405 0.24 +0.7 525,918 - HSERO_RS02405 0.30 +0.7 526,263 + HSERO_RS02405 0.54 +1.2 526,323 + HSERO_RS02405 0.58 +0.5 526,344 - HSERO_RS02405 0.60 +1.2 526,359 - HSERO_RS02405 0.61 +0.8 526,359 - HSERO_RS02405 0.61 +0.4 526,872 + +0.6 526,984 + +0.7 527,231 - +1.1 527,324 - HSERO_RS02410 0.12 -0.0 527,351 + HSERO_RS02410 0.13 +0.5 527,766 + HSERO_RS02410 0.26 +1.1 527,897 - HSERO_RS02410 0.31 +0.0
Or see this region's nucleotide sequence