Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02330 and HSERO_RS02335 are separated by 175 nucleotides HSERO_RS02335 and HSERO_RS02340 overlap by 1 nucleotides HSERO_RS02340 and HSERO_RS02345 are separated by 114 nucleotides HSERO_RS02345 and HSERO_RS02350 overlap by 71 nucleotides
HSERO_RS02330: HSERO_RS02330 - aspartate carbamoyltransferase, at 508,747 to 509,706
_RS02330
HSERO_RS02335: HSERO_RS02335 - excinuclease ABC subunit C, at 509,882 to 510,166
_RS02335
HSERO_RS02340: HSERO_RS02340 - dihydroorotase, at 510,166 to 511,452
_RS02340
HSERO_RS02345: HSERO_RS02345 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 511,567 to 512,367
_RS02345
HSERO_RS02350: HSERO_RS02350 - diadenosine tetraphosphatase, at 512,297 to 513,121
_RS02350
Position (kb) 510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 509.222 kb on - strand at 509.341 kb on - strand, within HSERO_RS02330 at 509.419 kb on - strand, within HSERO_RS02330 at 509.547 kb on + strand, within HSERO_RS02330 at 509.582 kb on - strand, within HSERO_RS02330 at 509.688 kb on - strand at 509.787 kb on - strand at 509.798 kb on + strand at 509.806 kb on - strand at 509.910 kb on + strand at 509.923 kb on + strand, within HSERO_RS02335 at 509.923 kb on + strand, within HSERO_RS02335 at 509.942 kb on - strand, within HSERO_RS02335 at 509.997 kb on - strand, within HSERO_RS02335 at 510.308 kb on + strand, within HSERO_RS02340 at 510.375 kb on + strand, within HSERO_RS02340 at 510.412 kb on + strand, within HSERO_RS02340 at 510.525 kb on + strand, within HSERO_RS02340 at 510.533 kb on - strand, within HSERO_RS02340 at 510.567 kb on + strand, within HSERO_RS02340 at 510.576 kb on - strand, within HSERO_RS02340 at 510.576 kb on - strand, within HSERO_RS02340 at 510.645 kb on - strand, within HSERO_RS02340 at 510.726 kb on - strand, within HSERO_RS02340 at 510.800 kb on + strand, within HSERO_RS02340 at 510.808 kb on - strand, within HSERO_RS02340 at 510.900 kb on + strand, within HSERO_RS02340 at 510.905 kb on + strand, within HSERO_RS02340 at 510.908 kb on + strand, within HSERO_RS02340 at 510.955 kb on - strand, within HSERO_RS02340 at 511.076 kb on + strand, within HSERO_RS02340 at 511.081 kb on + strand, within HSERO_RS02340 at 511.084 kb on - strand, within HSERO_RS02340 at 511.129 kb on + strand, within HSERO_RS02340 at 511.216 kb on - strand, within HSERO_RS02340 at 511.218 kb on + strand, within HSERO_RS02340 at 511.229 kb on + strand, within HSERO_RS02340 at 511.272 kb on - strand, within HSERO_RS02340 at 511.347 kb on - strand at 511.605 kb on + strand at 511.646 kb on + strand at 511.740 kb on - strand, within HSERO_RS02345 at 511.925 kb on - strand, within HSERO_RS02345 at 511.996 kb on + strand, within HSERO_RS02345 at 512.062 kb on + strand, within HSERO_RS02345 at 512.070 kb on - strand, within HSERO_RS02345 at 512.070 kb on - strand, within HSERO_RS02345 at 512.075 kb on - strand, within HSERO_RS02345 at 512.077 kb on - strand, within HSERO_RS02345 at 512.173 kb on + strand, within HSERO_RS02345 at 512.208 kb on + strand, within HSERO_RS02345 at 512.216 kb on - strand, within HSERO_RS02345 at 512.361 kb on + strand at 512.369 kb on - strand at 512.445 kb on + strand, within HSERO_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 509,222 - +1.6 509,341 - HSERO_RS02330 0.62 +0.7 509,419 - HSERO_RS02330 0.70 -0.1 509,547 + HSERO_RS02330 0.83 -0.1 509,582 - HSERO_RS02330 0.87 -2.6 509,688 - +0.7 509,787 - +0.7 509,798 + +0.9 509,806 - +1.1 509,910 + -1.5 509,923 + HSERO_RS02335 0.14 -0.1 509,923 + HSERO_RS02335 0.14 +0.2 509,942 - HSERO_RS02335 0.21 +1.3 509,997 - HSERO_RS02335 0.40 +0.5 510,308 + HSERO_RS02340 0.11 +1.1 510,375 + HSERO_RS02340 0.16 +1.4 510,412 + HSERO_RS02340 0.19 +1.3 510,525 + HSERO_RS02340 0.28 +0.8 510,533 - HSERO_RS02340 0.29 +1.3 510,567 + HSERO_RS02340 0.31 +1.2 510,576 - HSERO_RS02340 0.32 +0.3 510,576 - HSERO_RS02340 0.32 +0.8 510,645 - HSERO_RS02340 0.37 +1.3 510,726 - HSERO_RS02340 0.44 +1.6 510,800 + HSERO_RS02340 0.49 +2.4 510,808 - HSERO_RS02340 0.50 +0.9 510,900 + HSERO_RS02340 0.57 +2.0 510,905 + HSERO_RS02340 0.57 +1.5 510,908 + HSERO_RS02340 0.58 +1.2 510,955 - HSERO_RS02340 0.61 +0.7 511,076 + HSERO_RS02340 0.71 +1.2 511,081 + HSERO_RS02340 0.71 +0.9 511,084 - HSERO_RS02340 0.71 +1.5 511,129 + HSERO_RS02340 0.75 +1.3 511,216 - HSERO_RS02340 0.82 +2.0 511,218 + HSERO_RS02340 0.82 +1.3 511,229 + HSERO_RS02340 0.83 +1.1 511,272 - HSERO_RS02340 0.86 +1.3 511,347 - +1.4 511,605 + +1.9 511,646 + +1.0 511,740 - HSERO_RS02345 0.22 +0.5 511,925 - HSERO_RS02345 0.45 +0.4 511,996 + HSERO_RS02345 0.54 -0.4 512,062 + HSERO_RS02345 0.62 +0.5 512,070 - HSERO_RS02345 0.63 +0.6 512,070 - HSERO_RS02345 0.63 +0.5 512,075 - HSERO_RS02345 0.63 +0.3 512,077 - HSERO_RS02345 0.64 +0.5 512,173 + HSERO_RS02345 0.76 +0.2 512,208 + HSERO_RS02345 0.80 +0.3 512,216 - HSERO_RS02345 0.81 -0.1 512,361 + -1.6 512,369 - -0.4 512,445 + HSERO_RS02350 0.18 -0.8
Or see this region's nucleotide sequence