Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02220 and HSERO_RS02225 are separated by 19 nucleotides HSERO_RS02225 and HSERO_RS02230 are separated by 42 nucleotides HSERO_RS02230 and HSERO_RS02235 are separated by 429 nucleotides
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
HSERO_RS02225: HSERO_RS02225 - acetyltransferase, at 486,450 to 486,911
_RS02225
HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516
_RS02230
HSERO_RS02235: HSERO_RS02235 - membrane protein, at 488,946 to 489,752
_RS02235
Position (kb) 486
487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 485.962 kb on + strand at 486.038 kb on - strand, within HSERO_RS02220 at 486.043 kb on - strand, within HSERO_RS02220 at 486.099 kb on + strand, within HSERO_RS02220 at 486.291 kb on + strand at 486.342 kb on - strand at 486.641 kb on + strand, within HSERO_RS02225 at 486.649 kb on - strand, within HSERO_RS02225 at 486.727 kb on + strand, within HSERO_RS02225 at 486.734 kb on - strand, within HSERO_RS02225 at 486.780 kb on + strand, within HSERO_RS02225 at 486.825 kb on - strand, within HSERO_RS02225 at 486.970 kb on - strand at 487.010 kb on + strand at 487.285 kb on + strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.426 kb on - strand, within HSERO_RS02230 at 487.682 kb on + strand, within HSERO_RS02230 at 487.704 kb on - strand, within HSERO_RS02230 at 487.860 kb on + strand, within HSERO_RS02230 at 487.872 kb on + strand, within HSERO_RS02230 at 487.880 kb on - strand, within HSERO_RS02230 at 488.050 kb on - strand, within HSERO_RS02230 at 488.138 kb on - strand at 488.164 kb on + strand, within HSERO_RS02230 at 488.238 kb on + strand, within HSERO_RS02230 at 488.278 kb on + strand, within HSERO_RS02230 at 488.285 kb on - strand, within HSERO_RS02230 at 488.400 kb on - strand at 488.441 kb on - strand at 488.524 kb on - strand at 488.944 kb on + strand at 488.980 kb on - strand at 489.000 kb on - strand at 489.019 kb on - strand at 489.037 kb on + strand, within HSERO_RS02235 at 489.168 kb on - strand, within HSERO_RS02235 at 489.168 kb on - strand, within HSERO_RS02235 at 489.325 kb on + strand, within HSERO_RS02235 at 489.464 kb on - strand, within HSERO_RS02235
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 485,962 + -0.7 486,038 - HSERO_RS02220 0.73 -0.2 486,043 - HSERO_RS02220 0.74 -1.0 486,099 + HSERO_RS02220 0.77 -0.5 486,291 + -0.7 486,342 - -1.1 486,641 + HSERO_RS02225 0.41 -0.3 486,649 - HSERO_RS02225 0.43 +0.2 486,727 + HSERO_RS02225 0.60 +0.2 486,734 - HSERO_RS02225 0.61 +0.4 486,780 + HSERO_RS02225 0.71 -0.3 486,825 - HSERO_RS02225 0.81 +0.3 486,970 - +0.1 487,010 + +1.3 487,285 + HSERO_RS02230 0.21 +0.3 487,291 - HSERO_RS02230 0.22 +0.6 487,291 - HSERO_RS02230 0.22 +0.4 487,426 - HSERO_RS02230 0.30 +0.3 487,682 + HSERO_RS02230 0.47 -0.7 487,704 - HSERO_RS02230 0.48 +0.1 487,860 + HSERO_RS02230 0.58 +1.1 487,872 + HSERO_RS02230 0.59 +0.3 487,880 - HSERO_RS02230 0.59 +0.8 488,050 - HSERO_RS02230 0.70 +0.5 488,138 - +1.2 488,164 + HSERO_RS02230 0.77 -0.1 488,238 + HSERO_RS02230 0.82 +1.1 488,278 + HSERO_RS02230 0.85 +0.5 488,285 - HSERO_RS02230 0.85 +1.3 488,400 - +2.2 488,441 - +0.6 488,524 - +0.7 488,944 + +0.5 488,980 - +0.4 489,000 - +0.6 489,019 - -0.2 489,037 + HSERO_RS02235 0.11 -0.6 489,168 - HSERO_RS02235 0.28 -0.2 489,168 - HSERO_RS02235 0.28 +0.6 489,325 + HSERO_RS02235 0.47 -2.5 489,464 - HSERO_RS02235 0.64 +0.0
Or see this region's nucleotide sequence