Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01590 and HSERO_RS01595 are separated by 354 nucleotides HSERO_RS01595 and HSERO_RS01600 are separated by 181 nucleotides HSERO_RS01600 and HSERO_RS01605 are separated by 85 nucleotides
HSERO_RS01590: HSERO_RS01590 - antibiotic biosynthesis monooxygenase, at 353,448 to 353,792
_RS01590
HSERO_RS01595: HSERO_RS01595 - MarR family transcriptional regulator, at 354,147 to 354,602
_RS01595
HSERO_RS01600: HSERO_RS01600 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 354,784 to 355,536
_RS01600
HSERO_RS01605: HSERO_RS01605 - amino acid dehydrogenase, at 355,622 to 356,887
_RS01605
Position (kb) 354
355
356 Strain fitness (log2 ratio) -1
0
1 at 353.790 kb on + strand at 353.790 kb on + strand at 353.800 kb on + strand at 353.846 kb on - strand at 353.867 kb on + strand at 353.867 kb on + strand at 353.867 kb on + strand at 353.867 kb on + strand at 353.867 kb on + strand at 353.875 kb on - strand at 353.875 kb on - strand at 353.921 kb on + strand at 353.940 kb on + strand at 354.032 kb on + strand at 354.124 kb on - strand at 354.126 kb on + strand at 354.500 kb on - strand, within HSERO_RS01595 at 354.500 kb on - strand, within HSERO_RS01595 at 354.600 kb on - strand at 354.755 kb on + strand at 354.857 kb on - strand at 355.108 kb on - strand at 355.111 kb on + strand, within HSERO_RS01600 at 355.124 kb on + strand, within HSERO_RS01600 at 355.178 kb on + strand, within HSERO_RS01600 at 355.497 kb on - strand at 355.552 kb on + strand at 355.557 kb on + strand at 355.859 kb on + strand, within HSERO_RS01605 at 356.070 kb on + strand, within HSERO_RS01605 at 356.384 kb on + strand, within HSERO_RS01605 at 356.451 kb on - strand, within HSERO_RS01605 at 356.504 kb on - strand, within HSERO_RS01605 at 356.514 kb on - strand, within HSERO_RS01605 at 356.525 kb on - strand, within HSERO_RS01605
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 353,790 + +0.3 353,790 + +0.1 353,800 + -1.6 353,846 - +0.3 353,867 + +0.2 353,867 + +0.1 353,867 + -0.8 353,867 + -0.5 353,867 + +0.7 353,875 - -0.3 353,875 - -0.3 353,921 + -0.7 353,940 + +0.0 354,032 + -0.3 354,124 - +0.1 354,126 + +0.4 354,500 - HSERO_RS01595 0.77 +0.3 354,500 - HSERO_RS01595 0.77 -0.8 354,600 - +0.7 354,755 + +1.2 354,857 - -0.9 355,108 - +0.6 355,111 + HSERO_RS01600 0.43 -0.3 355,124 + HSERO_RS01600 0.45 +0.2 355,178 + HSERO_RS01600 0.52 +1.4 355,497 - +0.1 355,552 + -1.6 355,557 + -0.2 355,859 + HSERO_RS01605 0.19 +0.4 356,070 + HSERO_RS01605 0.35 -0.6 356,384 + HSERO_RS01605 0.60 -1.2 356,451 - HSERO_RS01605 0.65 +0.1 356,504 - HSERO_RS01605 0.70 -0.6 356,514 - HSERO_RS01605 0.70 +0.3 356,525 - HSERO_RS01605 0.71 +0.4
Or see this region's nucleotide sequence