Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01520 and HSERO_RS01525 are separated by 22 nucleotides HSERO_RS01525 and HSERO_RS01530 are separated by 94 nucleotides
HSERO_RS01520: HSERO_RS01520 - hemagglutinin, at 330,490 to 334,758
_RS01520
HSERO_RS01525: HSERO_RS01525 - hypothetical protein, at 334,781 to 335,539
_RS01525
HSERO_RS01530: HSERO_RS01530 - 3',5'-cyclic-nucleotide phosphodiesterase, at 335,634 to 336,407
_RS01530
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 333.875 kb on + strand, within HSERO_RS01520 at 333.883 kb on - strand, within HSERO_RS01520 at 333.941 kb on + strand, within HSERO_RS01520 at 333.997 kb on - strand, within HSERO_RS01520 at 334.024 kb on - strand, within HSERO_RS01520 at 334.173 kb on + strand, within HSERO_RS01520 at 334.212 kb on + strand, within HSERO_RS01520 at 334.445 kb on + strand at 334.549 kb on - strand at 334.627 kb on - strand at 334.766 kb on + strand at 334.800 kb on - strand at 335.017 kb on - strand, within HSERO_RS01525 at 335.061 kb on + strand, within HSERO_RS01525 at 335.061 kb on + strand, within HSERO_RS01525 at 335.134 kb on + strand, within HSERO_RS01525 at 335.142 kb on - strand, within HSERO_RS01525 at 335.251 kb on + strand, within HSERO_RS01525 at 335.384 kb on - strand, within HSERO_RS01525 at 335.531 kb on + strand at 335.555 kb on - strand at 335.736 kb on - strand, within HSERO_RS01530 at 335.800 kb on - strand, within HSERO_RS01530 at 335.987 kb on - strand, within HSERO_RS01530 at 335.999 kb on - strand, within HSERO_RS01530 at 336.001 kb on - strand, within HSERO_RS01530 at 336.349 kb on - strand at 336.349 kb on - strand at 336.470 kb on - strand at 336.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 333,875 + HSERO_RS01520 0.79 +0.7 333,883 - HSERO_RS01520 0.79 +0.6 333,941 + HSERO_RS01520 0.81 +0.2 333,997 - HSERO_RS01520 0.82 -0.4 334,024 - HSERO_RS01520 0.83 +0.3 334,173 + HSERO_RS01520 0.86 +1.1 334,212 + HSERO_RS01520 0.87 -0.6 334,445 + +0.5 334,549 - +0.4 334,627 - +0.3 334,766 + -0.2 334,800 - +0.0 335,017 - HSERO_RS01525 0.31 +1.0 335,061 + HSERO_RS01525 0.37 +1.0 335,061 + HSERO_RS01525 0.37 -0.4 335,134 + HSERO_RS01525 0.47 +0.1 335,142 - HSERO_RS01525 0.48 +1.3 335,251 + HSERO_RS01525 0.62 +1.4 335,384 - HSERO_RS01525 0.79 +0.8 335,531 + +0.4 335,555 - -1.7 335,736 - HSERO_RS01530 0.13 -2.8 335,800 - HSERO_RS01530 0.21 -1.4 335,987 - HSERO_RS01530 0.46 -0.3 335,999 - HSERO_RS01530 0.47 -1.1 336,001 - HSERO_RS01530 0.47 -0.2 336,349 - -1.9 336,349 - -0.7 336,470 - -0.1 336,526 + -0.7
Or see this region's nucleotide sequence