Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01510 and HSERO_RS01515 are separated by 568 nucleotides HSERO_RS01515 and HSERO_RS01520 are separated by 1 nucleotides
HSERO_RS01510: HSERO_RS01510 - membrane protein, at 327,281 to 328,219
_RS01510
HSERO_RS01515: HSERO_RS01515 - hemin-binding protein, at 328,788 to 330,488
_RS01515
HSERO_RS01520: HSERO_RS01520 - hemagglutinin, at 330,490 to 334,758
_RS01520
Position (kb) 328
329
330
331 Strain fitness (log2 ratio) -1
0
1
2 at 327.840 kb on + strand, within HSERO_RS01510 at 327.856 kb on - strand, within HSERO_RS01510 at 327.916 kb on + strand, within HSERO_RS01510 at 327.946 kb on + strand, within HSERO_RS01510 at 328.145 kb on + strand at 328.145 kb on + strand at 328.393 kb on + strand at 328.401 kb on - strand at 328.458 kb on + strand at 328.630 kb on + strand at 328.630 kb on + strand at 328.874 kb on + strand at 328.879 kb on - strand at 328.971 kb on - strand at 328.971 kb on - strand, within HSERO_RS01515 at 329.131 kb on + strand, within HSERO_RS01515 at 329.168 kb on + strand, within HSERO_RS01515 at 329.176 kb on - strand, within HSERO_RS01515 at 329.181 kb on - strand, within HSERO_RS01515 at 329.237 kb on + strand, within HSERO_RS01515 at 329.506 kb on + strand, within HSERO_RS01515 at 329.549 kb on + strand, within HSERO_RS01515 at 329.566 kb on - strand, within HSERO_RS01515 at 329.601 kb on - strand, within HSERO_RS01515 at 329.767 kb on - strand, within HSERO_RS01515 at 329.819 kb on - strand, within HSERO_RS01515 at 329.942 kb on + strand, within HSERO_RS01515 at 329.989 kb on - strand, within HSERO_RS01515 at 330.157 kb on + strand, within HSERO_RS01515 at 330.331 kb on + strand at 330.365 kb on - strand at 330.469 kb on + strand at 330.475 kb on + strand at 330.575 kb on + strand at 330.722 kb on - strand at 330.962 kb on - strand, within HSERO_RS01520 at 330.996 kb on - strand, within HSERO_RS01520 at 331.007 kb on - strand, within HSERO_RS01520 at 331.117 kb on + strand, within HSERO_RS01520 at 331.235 kb on - strand, within HSERO_RS01520 at 331.310 kb on - strand, within HSERO_RS01520 at 331.450 kb on + strand, within HSERO_RS01520
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 327,840 + HSERO_RS01510 0.60 +1.1 327,856 - HSERO_RS01510 0.61 +0.7 327,916 + HSERO_RS01510 0.68 +1.3 327,946 + HSERO_RS01510 0.71 +0.7 328,145 + +1.0 328,145 + +0.8 328,393 + -0.8 328,401 - +0.8 328,458 + -1.3 328,630 + -1.1 328,630 + -0.8 328,874 + +0.8 328,879 - +0.8 328,971 - +0.6 328,971 - HSERO_RS01515 0.11 +0.7 329,131 + HSERO_RS01515 0.20 +0.4 329,168 + HSERO_RS01515 0.22 +1.1 329,176 - HSERO_RS01515 0.23 +1.1 329,181 - HSERO_RS01515 0.23 +1.2 329,237 + HSERO_RS01515 0.26 -0.7 329,506 + HSERO_RS01515 0.42 +0.9 329,549 + HSERO_RS01515 0.45 +0.4 329,566 - HSERO_RS01515 0.46 +0.4 329,601 - HSERO_RS01515 0.48 +0.6 329,767 - HSERO_RS01515 0.58 -0.2 329,819 - HSERO_RS01515 0.61 +0.8 329,942 + HSERO_RS01515 0.68 +2.0 329,989 - HSERO_RS01515 0.71 +0.5 330,157 + HSERO_RS01515 0.80 +0.2 330,331 + +1.0 330,365 - +1.5 330,469 + +1.2 330,475 + +1.6 330,575 + +0.6 330,722 - +1.4 330,962 - HSERO_RS01520 0.11 +0.4 330,996 - HSERO_RS01520 0.12 +0.4 331,007 - HSERO_RS01520 0.12 +0.8 331,117 + HSERO_RS01520 0.15 +0.6 331,235 - HSERO_RS01520 0.17 -1.0 331,310 - HSERO_RS01520 0.19 +0.3 331,450 + HSERO_RS01520 0.22 +0.6
Or see this region's nucleotide sequence