Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01505 and HSERO_RS01510 are separated by 55 nucleotides HSERO_RS01510 and HSERO_RS01515 are separated by 568 nucleotides
HSERO_RS01505: HSERO_RS01505 - transketolase, at 326,260 to 327,225
_RS01505
HSERO_RS01510: HSERO_RS01510 - membrane protein, at 327,281 to 328,219
_RS01510
HSERO_RS01515: HSERO_RS01515 - hemin-binding protein, at 328,788 to 330,488
_RS01515
Position (kb) 327
328
329 Strain fitness (log2 ratio) -1
0
1 at 326.330 kb on + strand at 326.476 kb on + strand, within HSERO_RS01505 at 326.814 kb on + strand, within HSERO_RS01505 at 326.899 kb on - strand, within HSERO_RS01505 at 326.996 kb on - strand, within HSERO_RS01505 at 327.181 kb on + strand at 327.271 kb on + strand at 327.332 kb on - strand at 327.714 kb on + strand, within HSERO_RS01510 at 327.724 kb on + strand, within HSERO_RS01510 at 327.840 kb on + strand, within HSERO_RS01510 at 327.856 kb on - strand, within HSERO_RS01510 at 327.916 kb on + strand, within HSERO_RS01510 at 327.946 kb on + strand, within HSERO_RS01510 at 328.145 kb on + strand at 328.145 kb on + strand at 328.393 kb on + strand at 328.401 kb on - strand at 328.458 kb on + strand at 328.630 kb on + strand at 328.630 kb on + strand at 328.874 kb on + strand at 328.879 kb on - strand at 328.971 kb on - strand at 328.971 kb on - strand, within HSERO_RS01515 at 329.131 kb on + strand, within HSERO_RS01515 at 329.168 kb on + strand, within HSERO_RS01515 at 329.176 kb on - strand, within HSERO_RS01515 at 329.181 kb on - strand, within HSERO_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 326,330 + -0.4 326,476 + HSERO_RS01505 0.22 +1.0 326,814 + HSERO_RS01505 0.57 -0.6 326,899 - HSERO_RS01505 0.66 -0.0 326,996 - HSERO_RS01505 0.76 +1.3 327,181 + +0.6 327,271 + -0.2 327,332 - +0.8 327,714 + HSERO_RS01510 0.46 +0.7 327,724 + HSERO_RS01510 0.47 +0.5 327,840 + HSERO_RS01510 0.60 +1.1 327,856 - HSERO_RS01510 0.61 +0.7 327,916 + HSERO_RS01510 0.68 +1.3 327,946 + HSERO_RS01510 0.71 +0.7 328,145 + +1.0 328,145 + +0.8 328,393 + -0.8 328,401 - +0.8 328,458 + -1.3 328,630 + -1.1 328,630 + -0.8 328,874 + +0.8 328,879 - +0.8 328,971 - +0.6 328,971 - HSERO_RS01515 0.11 +0.7 329,131 + HSERO_RS01515 0.20 +0.4 329,168 + HSERO_RS01515 0.22 +1.1 329,176 - HSERO_RS01515 0.23 +1.1 329,181 - HSERO_RS01515 0.23 +1.2
Or see this region's nucleotide sequence