Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01495 and HSERO_RS01500 are separated by 116 nucleotides HSERO_RS01500 and HSERO_RS01505 overlap by 4 nucleotides HSERO_RS01505 and HSERO_RS01510 are separated by 55 nucleotides
HSERO_RS01495: HSERO_RS01495 - Fe-S osidoreductase, at 323,802 to 325,328
_RS01495
HSERO_RS01500: HSERO_RS01500 - transketolase, at 325,445 to 326,263
_RS01500
HSERO_RS01505: HSERO_RS01505 - transketolase, at 326,260 to 327,225
_RS01505
HSERO_RS01510: HSERO_RS01510 - membrane protein, at 327,281 to 328,219
_RS01510
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1 at 325.348 kb on - strand at 325.388 kb on + strand at 325.803 kb on + strand, within HSERO_RS01500 at 325.811 kb on - strand, within HSERO_RS01500 at 325.816 kb on - strand, within HSERO_RS01500 at 325.877 kb on - strand, within HSERO_RS01500 at 326.145 kb on - strand, within HSERO_RS01500 at 326.145 kb on - strand, within HSERO_RS01500 at 326.225 kb on - strand at 326.330 kb on + strand at 326.476 kb on + strand, within HSERO_RS01505 at 326.814 kb on + strand, within HSERO_RS01505 at 326.899 kb on - strand, within HSERO_RS01505 at 326.996 kb on - strand, within HSERO_RS01505 at 327.181 kb on + strand at 327.271 kb on + strand at 327.332 kb on - strand at 327.714 kb on + strand, within HSERO_RS01510 at 327.724 kb on + strand, within HSERO_RS01510 at 327.840 kb on + strand, within HSERO_RS01510 at 327.856 kb on - strand, within HSERO_RS01510 at 327.916 kb on + strand, within HSERO_RS01510 at 327.946 kb on + strand, within HSERO_RS01510 at 328.145 kb on + strand at 328.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 325,348 - +0.1 325,388 + -0.6 325,803 + HSERO_RS01500 0.44 +0.6 325,811 - HSERO_RS01500 0.45 +1.2 325,816 - HSERO_RS01500 0.45 +0.5 325,877 - HSERO_RS01500 0.53 -2.6 326,145 - HSERO_RS01500 0.85 +0.5 326,145 - HSERO_RS01500 0.85 +1.5 326,225 - +1.6 326,330 + -0.4 326,476 + HSERO_RS01505 0.22 +1.0 326,814 + HSERO_RS01505 0.57 -0.6 326,899 - HSERO_RS01505 0.66 -0.0 326,996 - HSERO_RS01505 0.76 +1.3 327,181 + +0.6 327,271 + -0.2 327,332 - +0.8 327,714 + HSERO_RS01510 0.46 +0.7 327,724 + HSERO_RS01510 0.47 +0.5 327,840 + HSERO_RS01510 0.60 +1.1 327,856 - HSERO_RS01510 0.61 +0.7 327,916 + HSERO_RS01510 0.68 +1.3 327,946 + HSERO_RS01510 0.71 +0.7 328,145 + +1.0 328,145 + +0.8
Or see this region's nucleotide sequence