Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01500

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01495 and HSERO_RS01500 are separated by 116 nucleotidesHSERO_RS01500 and HSERO_RS01505 overlap by 4 nucleotides HSERO_RS01495: HSERO_RS01495 - Fe-S osidoreductase, at 323,802 to 325,328 _RS01495 HSERO_RS01500: HSERO_RS01500 - transketolase, at 325,445 to 326,263 _RS01500 HSERO_RS01505: HSERO_RS01505 - transketolase, at 326,260 to 327,225 _RS01505 Position (kb) 325 326 327Strain fitness (log2 ratio) -2 -1 0 1at 324.567 kb on + strand, within HSERO_RS01495at 324.634 kb on + strand, within HSERO_RS01495at 324.689 kb on + strand, within HSERO_RS01495at 324.697 kb on - strand, within HSERO_RS01495at 324.804 kb on + strand, within HSERO_RS01495at 324.971 kb on + strand, within HSERO_RS01495at 324.971 kb on + strand, within HSERO_RS01495at 325.065 kb on + strand, within HSERO_RS01495at 325.067 kb on + strand, within HSERO_RS01495at 325.166 kb on - strand, within HSERO_RS01495at 325.348 kb on - strandat 325.388 kb on + strandat 325.803 kb on + strand, within HSERO_RS01500at 325.811 kb on - strand, within HSERO_RS01500at 325.816 kb on - strand, within HSERO_RS01500at 325.877 kb on - strand, within HSERO_RS01500at 326.145 kb on - strand, within HSERO_RS01500at 326.145 kb on - strand, within HSERO_RS01500at 326.225 kb on - strandat 326.330 kb on + strandat 326.476 kb on + strand, within HSERO_RS01505at 326.814 kb on + strand, within HSERO_RS01505at 326.899 kb on - strand, within HSERO_RS01505at 326.996 kb on - strand, within HSERO_RS01505at 327.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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324,567 + HSERO_RS01495 0.50 +0.4
324,634 + HSERO_RS01495 0.54 -0.2
324,689 + HSERO_RS01495 0.58 +0.9
324,697 - HSERO_RS01495 0.59 +0.6
324,804 + HSERO_RS01495 0.66 -0.3
324,971 + HSERO_RS01495 0.77 -0.4
324,971 + HSERO_RS01495 0.77 -0.0
325,065 + HSERO_RS01495 0.83 -0.2
325,067 + HSERO_RS01495 0.83 +0.0
325,166 - HSERO_RS01495 0.89 +0.2
325,348 - +0.1
325,388 + -0.6
325,803 + HSERO_RS01500 0.44 +0.6
325,811 - HSERO_RS01500 0.45 +1.2
325,816 - HSERO_RS01500 0.45 +0.5
325,877 - HSERO_RS01500 0.53 -2.6
326,145 - HSERO_RS01500 0.85 +0.5
326,145 - HSERO_RS01500 0.85 +1.5
326,225 - +1.6
326,330 + -0.4
326,476 + HSERO_RS01505 0.22 +1.0
326,814 + HSERO_RS01505 0.57 -0.6
326,899 - HSERO_RS01505 0.66 -0.0
326,996 - HSERO_RS01505 0.76 +1.3
327,181 + +0.6

Or see this region's nucleotide sequence