Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01480 and HSERO_RS01485 are separated by 9 nucleotides HSERO_RS01485 and HSERO_RS01490 are separated by 179 nucleotides
HSERO_RS01480: HSERO_RS01480 - heat-shock protein, at 318,640 to 319,896
_RS01480
HSERO_RS01485: HSERO_RS01485 - hypothetical protein, at 319,906 to 320,748
_RS01485
HSERO_RS01490: HSERO_RS01490 - guanylate cyclase, at 320,928 to 323,201
_RS01490
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1 at 319.000 kb on - strand, within HSERO_RS01480 at 319.003 kb on + strand, within HSERO_RS01480 at 319.011 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.375 kb on + strand, within HSERO_RS01480 at 319.421 kb on + strand, within HSERO_RS01480 at 319.508 kb on + strand, within HSERO_RS01480 at 319.620 kb on - strand, within HSERO_RS01480 at 319.707 kb on - strand, within HSERO_RS01480 at 319.826 kb on - strand at 319.961 kb on + strand at 320.033 kb on - strand, within HSERO_RS01485 at 320.069 kb on + strand, within HSERO_RS01485 at 320.099 kb on + strand, within HSERO_RS01485 at 320.224 kb on + strand, within HSERO_RS01485 at 320.325 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.592 kb on - strand, within HSERO_RS01485 at 320.648 kb on + strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.777 kb on + strand at 320.814 kb on + strand at 321.009 kb on + strand at 321.010 kb on - strand at 321.014 kb on + strand at 321.232 kb on + strand, within HSERO_RS01490 at 321.265 kb on + strand, within HSERO_RS01490 at 321.336 kb on + strand, within HSERO_RS01490 at 321.734 kb on + strand, within HSERO_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 319,000 - HSERO_RS01480 0.29 -0.2 319,003 + HSERO_RS01480 0.29 +0.2 319,011 - HSERO_RS01480 0.30 +0.5 319,334 - HSERO_RS01480 0.55 +1.1 319,334 - HSERO_RS01480 0.55 +0.5 319,375 + HSERO_RS01480 0.58 -0.6 319,421 + HSERO_RS01480 0.62 -1.1 319,508 + HSERO_RS01480 0.69 -0.0 319,620 - HSERO_RS01480 0.78 -1.2 319,707 - HSERO_RS01480 0.85 +0.3 319,826 - -1.2 319,961 + +0.4 320,033 - HSERO_RS01485 0.15 -0.3 320,069 + HSERO_RS01485 0.19 -1.0 320,099 + HSERO_RS01485 0.23 +0.2 320,224 + HSERO_RS01485 0.38 +0.2 320,325 + HSERO_RS01485 0.50 -0.9 320,445 + HSERO_RS01485 0.64 +0.1 320,445 + HSERO_RS01485 0.64 +0.0 320,592 - HSERO_RS01485 0.81 -0.2 320,648 + HSERO_RS01485 0.88 -0.2 320,656 - HSERO_RS01485 0.89 -0.0 320,656 - HSERO_RS01485 0.89 -0.5 320,777 + +0.3 320,814 + -0.9 321,009 + +0.3 321,010 - +1.6 321,014 + +1.2 321,232 + HSERO_RS01490 0.13 +0.1 321,265 + HSERO_RS01490 0.15 +1.6 321,336 + HSERO_RS01490 0.18 -1.9 321,734 + HSERO_RS01490 0.35 +0.6
Or see this region's nucleotide sequence