Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01475 and HSERO_RS01480 are separated by 216 nucleotides HSERO_RS01480 and HSERO_RS01485 are separated by 9 nucleotides
HSERO_RS01475: HSERO_RS01475 - oxidoreductase, at 317,677 to 318,423
_RS01475
HSERO_RS01480: HSERO_RS01480 - heat-shock protein, at 318,640 to 319,896
_RS01480
HSERO_RS01485: HSERO_RS01485 - hypothetical protein, at 319,906 to 320,748
_RS01485
Position (kb) 318
319
320 Strain fitness (log2 ratio) -1
0
1 at 317.676 kb on - strand at 317.982 kb on + strand, within HSERO_RS01475 at 317.987 kb on + strand, within HSERO_RS01475 at 318.021 kb on + strand, within HSERO_RS01475 at 318.022 kb on - strand, within HSERO_RS01475 at 318.036 kb on + strand, within HSERO_RS01475 at 318.181 kb on - strand, within HSERO_RS01475 at 318.292 kb on + strand, within HSERO_RS01475 at 318.351 kb on - strand at 318.391 kb on + strand at 318.502 kb on + strand at 318.596 kb on + strand at 318.604 kb on - strand at 318.656 kb on - strand at 318.761 kb on - strand at 318.779 kb on + strand, within HSERO_RS01480 at 318.811 kb on - strand, within HSERO_RS01480 at 318.856 kb on + strand, within HSERO_RS01480 at 319.000 kb on - strand, within HSERO_RS01480 at 319.003 kb on + strand, within HSERO_RS01480 at 319.011 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.375 kb on + strand, within HSERO_RS01480 at 319.421 kb on + strand, within HSERO_RS01480 at 319.508 kb on + strand, within HSERO_RS01480 at 319.620 kb on - strand, within HSERO_RS01480 at 319.707 kb on - strand, within HSERO_RS01480 at 319.826 kb on - strand at 319.961 kb on + strand at 320.033 kb on - strand, within HSERO_RS01485 at 320.069 kb on + strand, within HSERO_RS01485 at 320.099 kb on + strand, within HSERO_RS01485 at 320.224 kb on + strand, within HSERO_RS01485 at 320.325 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.592 kb on - strand, within HSERO_RS01485 at 320.648 kb on + strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.777 kb on + strand at 320.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 317,676 - -0.4 317,982 + HSERO_RS01475 0.41 -0.2 317,987 + HSERO_RS01475 0.41 -0.2 318,021 + HSERO_RS01475 0.46 -0.2 318,022 - HSERO_RS01475 0.46 +0.3 318,036 + HSERO_RS01475 0.48 +0.3 318,181 - HSERO_RS01475 0.67 +0.6 318,292 + HSERO_RS01475 0.82 +0.3 318,351 - +0.1 318,391 + +1.3 318,502 + +0.4 318,596 + +0.1 318,604 - +0.2 318,656 - +0.4 318,761 - +0.1 318,779 + HSERO_RS01480 0.11 +0.1 318,811 - HSERO_RS01480 0.14 -0.4 318,856 + HSERO_RS01480 0.17 -0.4 319,000 - HSERO_RS01480 0.29 -0.2 319,003 + HSERO_RS01480 0.29 +0.2 319,011 - HSERO_RS01480 0.30 +0.5 319,334 - HSERO_RS01480 0.55 +1.1 319,334 - HSERO_RS01480 0.55 +0.5 319,375 + HSERO_RS01480 0.58 -0.6 319,421 + HSERO_RS01480 0.62 -1.1 319,508 + HSERO_RS01480 0.69 -0.0 319,620 - HSERO_RS01480 0.78 -1.2 319,707 - HSERO_RS01480 0.85 +0.3 319,826 - -1.2 319,961 + +0.4 320,033 - HSERO_RS01485 0.15 -0.3 320,069 + HSERO_RS01485 0.19 -1.0 320,099 + HSERO_RS01485 0.23 +0.2 320,224 + HSERO_RS01485 0.38 +0.2 320,325 + HSERO_RS01485 0.50 -0.9 320,445 + HSERO_RS01485 0.64 +0.1 320,445 + HSERO_RS01485 0.64 +0.0 320,592 - HSERO_RS01485 0.81 -0.2 320,648 + HSERO_RS01485 0.88 -0.2 320,656 - HSERO_RS01485 0.89 -0.0 320,656 - HSERO_RS01485 0.89 -0.5 320,777 + +0.3 320,814 + -0.9
Or see this region's nucleotide sequence