Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01130 and HSERO_RS01135 overlap by 4 nucleotides HSERO_RS01135 and HSERO_RS01140 overlap by 4 nucleotides HSERO_RS01140 and HSERO_RS01145 are separated by 46 nucleotides HSERO_RS01145 and HSERO_RS01150 are separated by 362 nucleotides
HSERO_RS01130: HSERO_RS01130 - hypothetical protein, at 236,489 to 236,929
_RS01130
HSERO_RS01135: HSERO_RS01135 - hypothetical protein, at 236,926 to 237,348
_RS01135
HSERO_RS01140: HSERO_RS01140 - phage tail protein, at 237,345 to 237,704
_RS01140
HSERO_RS01145: HSERO_RS01145 - inner membrane protein, at 237,751 to 238,032
_RS01145
HSERO_RS01150: HSERO_RS01150 - membrane protein, at 238,395 to 239,696
_RS01150
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1 at 236.811 kb on + strand, within HSERO_RS01130 at 236.819 kb on - strand at 236.828 kb on - strand, within HSERO_RS01130 at 236.990 kb on - strand, within HSERO_RS01135 at 236.990 kb on - strand, within HSERO_RS01135 at 237.026 kb on - strand, within HSERO_RS01135 at 237.092 kb on + strand at 237.101 kb on - strand, within HSERO_RS01135 at 237.173 kb on + strand, within HSERO_RS01135 at 237.173 kb on + strand, within HSERO_RS01135 at 237.196 kb on - strand, within HSERO_RS01135 at 237.210 kb on + strand, within HSERO_RS01135 at 237.218 kb on - strand, within HSERO_RS01135 at 237.502 kb on + strand, within HSERO_RS01140 at 237.510 kb on - strand, within HSERO_RS01140 at 237.650 kb on - strand, within HSERO_RS01140 at 237.688 kb on - strand at 237.876 kb on + strand at 237.997 kb on - strand, within HSERO_RS01145 at 238.094 kb on + strand at 238.111 kb on + strand at 238.228 kb on + strand at 238.244 kb on - strand at 238.311 kb on - strand at 238.358 kb on - strand at 238.389 kb on - strand at 238.401 kb on - strand at 238.443 kb on + strand at 238.627 kb on + strand, within HSERO_RS01150 at 238.736 kb on - strand, within HSERO_RS01150 at 238.766 kb on + strand, within HSERO_RS01150 at 238.882 kb on - strand, within HSERO_RS01150 at 238.991 kb on - strand, within HSERO_RS01150
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 236,811 + HSERO_RS01130 0.73 +0.2 236,819 - -0.3 236,828 - HSERO_RS01130 0.77 -0.1 236,990 - HSERO_RS01135 0.15 +0.4 236,990 - HSERO_RS01135 0.15 +0.2 237,026 - HSERO_RS01135 0.24 +0.1 237,092 + +0.6 237,101 - HSERO_RS01135 0.41 -1.3 237,173 + HSERO_RS01135 0.58 +0.1 237,173 + HSERO_RS01135 0.58 +0.4 237,196 - HSERO_RS01135 0.64 +0.7 237,210 + HSERO_RS01135 0.67 +0.5 237,218 - HSERO_RS01135 0.69 -0.0 237,502 + HSERO_RS01140 0.44 -0.1 237,510 - HSERO_RS01140 0.46 +0.4 237,650 - HSERO_RS01140 0.85 +0.1 237,688 - +0.4 237,876 + +1.1 237,997 - HSERO_RS01145 0.87 +0.5 238,094 + +0.3 238,111 + +0.7 238,228 + -0.1 238,244 - -1.0 238,311 - +0.3 238,358 - -0.0 238,389 - +0.6 238,401 - +0.1 238,443 + -1.4 238,627 + HSERO_RS01150 0.18 +0.3 238,736 - HSERO_RS01150 0.26 +0.7 238,766 + HSERO_RS01150 0.28 +0.2 238,882 - HSERO_RS01150 0.37 -1.7 238,991 - HSERO_RS01150 0.46 +0.6
Or see this region's nucleotide sequence