Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01015 and HSERO_RS01020 are separated by 22 nucleotides HSERO_RS01020 and HSERO_RS01025 are separated by 29 nucleotides
HSERO_RS01015: HSERO_RS01015 - hypothetical protein, at 217,462 to 218,649
_RS01015
HSERO_RS01020: HSERO_RS01020 - hypothetical protein, at 218,672 to 219,103
_RS01020
HSERO_RS01025: HSERO_RS01025 - hypothetical protein, at 219,133 to 220,320
_RS01025
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.736 kb on + strand at 217.831 kb on - strand, within HSERO_RS01015 at 217.836 kb on - strand, within HSERO_RS01015 at 217.941 kb on - strand, within HSERO_RS01015 at 217.974 kb on + strand, within HSERO_RS01015 at 218.115 kb on - strand, within HSERO_RS01015 at 218.130 kb on + strand, within HSERO_RS01015 at 218.198 kb on + strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.282 kb on + strand, within HSERO_RS01015 at 218.381 kb on + strand, within HSERO_RS01015 at 218.669 kb on + strand at 218.807 kb on + strand, within HSERO_RS01020 at 218.807 kb on + strand, within HSERO_RS01020 at 218.984 kb on + strand, within HSERO_RS01020 at 218.992 kb on - strand, within HSERO_RS01020 at 219.253 kb on + strand, within HSERO_RS01025 at 219.261 kb on - strand, within HSERO_RS01025 at 219.261 kb on - strand, within HSERO_RS01025 at 219.273 kb on + strand, within HSERO_RS01025 at 219.526 kb on + strand, within HSERO_RS01025 at 219.526 kb on + strand, within HSERO_RS01025 at 219.661 kb on + strand, within HSERO_RS01025 at 219.832 kb on - strand, within HSERO_RS01025 at 219.924 kb on + strand, within HSERO_RS01025 at 219.925 kb on + strand, within HSERO_RS01025 at 219.934 kb on + strand, within HSERO_RS01025
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 217,736 + -0.0 217,831 - HSERO_RS01015 0.31 +1.2 217,836 - HSERO_RS01015 0.31 -2.3 217,941 - HSERO_RS01015 0.40 +0.2 217,974 + HSERO_RS01015 0.43 -0.2 218,115 - HSERO_RS01015 0.55 +0.1 218,130 + HSERO_RS01015 0.56 -0.0 218,198 + HSERO_RS01015 0.62 -0.0 218,206 - HSERO_RS01015 0.63 -0.2 218,206 - HSERO_RS01015 0.63 -1.0 218,206 - HSERO_RS01015 0.63 +0.7 218,282 + HSERO_RS01015 0.69 -0.8 218,381 + HSERO_RS01015 0.77 +0.1 218,669 + +0.1 218,807 + HSERO_RS01020 0.31 +1.5 218,807 + HSERO_RS01020 0.31 +0.9 218,984 + HSERO_RS01020 0.72 -0.1 218,992 - HSERO_RS01020 0.74 -0.2 219,253 + HSERO_RS01025 0.10 +0.6 219,261 - HSERO_RS01025 0.11 -1.3 219,261 - HSERO_RS01025 0.11 +1.1 219,273 + HSERO_RS01025 0.12 -0.7 219,526 + HSERO_RS01025 0.33 -0.1 219,526 + HSERO_RS01025 0.33 -0.6 219,661 + HSERO_RS01025 0.44 -0.2 219,832 - HSERO_RS01025 0.59 +0.1 219,924 + HSERO_RS01025 0.67 -0.3 219,925 + HSERO_RS01025 0.67 -0.2 219,934 + HSERO_RS01025 0.67 +0.3
Or see this region's nucleotide sequence