Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00905 and HSERO_RS00910 are separated by 198 nucleotides HSERO_RS00910 and HSERO_RS00915 are separated by 64 nucleotides HSERO_RS00915 and HSERO_RS00920 are separated by 22 nucleotides HSERO_RS00920 and HSERO_RS00925 are separated by 322 nucleotides
HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 188,203 to 191,895
_RS00905
HSERO_RS00910: HSERO_RS00910 - peptidase, at 192,094 to 192,630
_RS00910
HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041
_RS00915
HSERO_RS00920: HSERO_RS00920 - hypothetical protein, at 194,064 to 194,267
_RS00920
HSERO_RS00925: HSERO_RS00925 - porin, at 194,590 to 195,762
_RS00925
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -1
0
1
2 at 191.844 kb on - strand at 191.862 kb on + strand at 192.153 kb on + strand, within HSERO_RS00910 at 192.293 kb on + strand, within HSERO_RS00910 at 192.381 kb on + strand, within HSERO_RS00910 at 192.404 kb on - strand, within HSERO_RS00910 at 192.537 kb on + strand, within HSERO_RS00910 at 192.588 kb on + strand at 192.624 kb on + strand at 192.882 kb on - strand, within HSERO_RS00915 at 193.054 kb on - strand, within HSERO_RS00915 at 193.272 kb on - strand, within HSERO_RS00915 at 193.303 kb on + strand, within HSERO_RS00915 at 193.303 kb on + strand, within HSERO_RS00915 at 193.311 kb on - strand, within HSERO_RS00915 at 193.322 kb on + strand, within HSERO_RS00915 at 193.330 kb on - strand, within HSERO_RS00915 at 193.478 kb on - strand, within HSERO_RS00915 at 193.518 kb on - strand, within HSERO_RS00915 at 193.597 kb on + strand, within HSERO_RS00915 at 193.605 kb on - strand, within HSERO_RS00915 at 193.643 kb on - strand, within HSERO_RS00915 at 193.645 kb on + strand, within HSERO_RS00915 at 193.653 kb on - strand, within HSERO_RS00915 at 193.661 kb on - strand, within HSERO_RS00915 at 193.779 kb on - strand, within HSERO_RS00915 at 193.825 kb on + strand, within HSERO_RS00915 at 193.901 kb on - strand, within HSERO_RS00915 at 193.941 kb on + strand at 193.960 kb on - strand at 193.960 kb on - strand at 193.988 kb on - strand at 194.099 kb on + strand, within HSERO_RS00920 at 194.145 kb on - strand, within HSERO_RS00920 at 194.152 kb on - strand, within HSERO_RS00920 at 194.219 kb on - strand, within HSERO_RS00920 at 194.221 kb on + strand, within HSERO_RS00920 at 194.369 kb on - strand at 194.405 kb on - strand at 194.417 kb on - strand at 194.501 kb on + strand at 194.501 kb on + strand at 194.507 kb on - strand at 194.509 kb on - strand at 194.531 kb on - strand at 194.559 kb on + strand at 194.916 kb on - strand, within HSERO_RS00925 at 194.949 kb on - strand, within HSERO_RS00925 at 194.949 kb on - strand, within HSERO_RS00925 at 194.992 kb on + strand at 195.033 kb on - strand, within HSERO_RS00925
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 191,844 - -1.2 191,862 + -0.4 192,153 + HSERO_RS00910 0.11 +1.5 192,293 + HSERO_RS00910 0.37 +1.6 192,381 + HSERO_RS00910 0.53 +1.5 192,404 - HSERO_RS00910 0.58 +1.7 192,537 + HSERO_RS00910 0.82 +1.6 192,588 + +0.9 192,624 + -1.0 192,882 - HSERO_RS00915 0.14 +1.2 193,054 - HSERO_RS00915 0.27 +1.5 193,272 - HSERO_RS00915 0.43 +1.7 193,303 + HSERO_RS00915 0.45 +1.8 193,303 + HSERO_RS00915 0.45 +1.2 193,311 - HSERO_RS00915 0.46 +1.3 193,322 + HSERO_RS00915 0.47 +1.7 193,330 - HSERO_RS00915 0.47 +1.4 193,478 - HSERO_RS00915 0.58 +0.0 193,518 - HSERO_RS00915 0.61 +1.0 193,597 + HSERO_RS00915 0.67 +2.3 193,605 - HSERO_RS00915 0.68 +1.8 193,643 - HSERO_RS00915 0.70 +1.9 193,645 + HSERO_RS00915 0.71 +1.8 193,653 - HSERO_RS00915 0.71 +1.5 193,661 - HSERO_RS00915 0.72 +1.4 193,779 - HSERO_RS00915 0.80 +1.6 193,825 + HSERO_RS00915 0.84 +1.7 193,901 - HSERO_RS00915 0.90 +1.4 193,941 + +2.0 193,960 - +2.1 193,960 - -0.0 193,988 - +0.9 194,099 + HSERO_RS00920 0.17 -0.4 194,145 - HSERO_RS00920 0.40 +0.1 194,152 - HSERO_RS00920 0.43 +0.6 194,219 - HSERO_RS00920 0.76 -0.2 194,221 + HSERO_RS00920 0.77 +0.0 194,369 - -0.1 194,405 - -0.6 194,417 - +0.4 194,501 + +0.3 194,501 + -0.4 194,507 - -0.3 194,509 - -1.1 194,531 - -0.9 194,559 + -0.9 194,916 - HSERO_RS00925 0.28 -1.1 194,949 - HSERO_RS00925 0.31 -0.6 194,949 - HSERO_RS00925 0.31 -0.3 194,992 + +1.8 195,033 - HSERO_RS00925 0.38 -0.2
Or see this region's nucleotide sequence