Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00885 and HSERO_RS00890 are separated by 54 nucleotides HSERO_RS00890 and HSERO_RS00895 are separated by 15 nucleotides HSERO_RS00895 and HSERO_RS00900 are separated by 196 nucleotides
HSERO_RS00885: HSERO_RS00885 - L-proline ABC transporter, permease component 1 <small>(from data)</small>, at 184,042 to 184,971
_RS00885
HSERO_RS00890: HSERO_RS00890 - L-proline ABC transporter, permease component 2 <small>(from data)</small>, at 185,026 to 186,240
_RS00890
HSERO_RS00895: HSERO_RS00895 - L-proline ABC transporter, ATPase component 1 <small>(from data)</small>, at 186,256 to 187,023
_RS00895
HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 <small>(from data)</small>, at 187,220 to 187,945
_RS00900
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.033 kb on - strand at 184.086 kb on - strand at 184.971 kb on + strand at 185.007 kb on - strand at 185.459 kb on - strand, within HSERO_RS00890 at 185.796 kb on - strand, within HSERO_RS00890 at 186.395 kb on + strand, within HSERO_RS00895 at 186.395 kb on + strand, within HSERO_RS00895 at 186.936 kb on - strand, within HSERO_RS00895 at 187.038 kb on - strand at 187.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 184,033 - +0.5 184,086 - +0.2 184,971 + -0.8 185,007 - -0.4 185,459 - HSERO_RS00890 0.36 +0.4 185,796 - HSERO_RS00890 0.63 +1.0 186,395 + HSERO_RS00895 0.18 -0.4 186,395 + HSERO_RS00895 0.18 -0.1 186,936 - HSERO_RS00895 0.89 -0.3 187,038 - -0.2 187,089 - +0.9
Or see this region's nucleotide sequence