Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00860 and HSERO_RS00865 are separated by 23 nucleotides HSERO_RS00865 and HSERO_RS00870 are separated by 317 nucleotides HSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotides
HSERO_RS00860: HSERO_RS00860 - AraC family transcriptional regulator, at 178,794 to 179,765
_RS00860
HSERO_RS00865: HSERO_RS00865 - AsnC family transcriptional regulator, at 179,789 to 180,253
_RS00865
HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component <small>(from data)</small>, at 180,571 to 181,707
_RS00870
HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946
_RS00875
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 179.594 kb on + strand, within HSERO_RS00860 at 179.848 kb on - strand, within HSERO_RS00865 at 179.880 kb on - strand, within HSERO_RS00865 at 180.021 kb on - strand, within HSERO_RS00865 at 180.029 kb on + strand, within HSERO_RS00865 at 180.037 kb on - strand, within HSERO_RS00865 at 180.037 kb on - strand, within HSERO_RS00865 at 180.073 kb on + strand, within HSERO_RS00865 at 180.086 kb on - strand, within HSERO_RS00865 at 180.101 kb on - strand, within HSERO_RS00865 at 180.111 kb on - strand, within HSERO_RS00865 at 180.115 kb on + strand at 180.116 kb on + strand, within HSERO_RS00865 at 180.118 kb on + strand, within HSERO_RS00865 at 180.161 kb on + strand, within HSERO_RS00865 at 180.194 kb on - strand, within HSERO_RS00865 at 180.247 kb on + strand at 180.404 kb on + strand at 180.404 kb on + strand at 180.407 kb on + strand at 180.412 kb on - strand at 180.422 kb on - strand at 180.422 kb on - strand at 180.422 kb on - strand at 180.472 kb on - strand at 180.472 kb on - strand at 180.473 kb on + strand at 180.581 kb on - strand at 180.584 kb on + strand at 180.717 kb on - strand, within HSERO_RS00870 at 180.862 kb on - strand, within HSERO_RS00870 at 181.089 kb on - strand, within HSERO_RS00870 at 181.146 kb on + strand, within HSERO_RS00870 at 181.172 kb on - strand, within HSERO_RS00870 at 181.185 kb on + strand, within HSERO_RS00870 at 181.267 kb on + strand, within HSERO_RS00870 at 181.275 kb on - strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.589 kb on - strand, within HSERO_RS00870 at 181.763 kb on + strand at 181.763 kb on + strand at 181.824 kb on + strand at 181.906 kb on + strand at 181.914 kb on - strand at 181.972 kb on - strand at 182.195 kb on - strand, within HSERO_RS00875 at 182.253 kb on + strand, within HSERO_RS00875 at 182.276 kb on - strand, within HSERO_RS00875 at 182.299 kb on - strand, within HSERO_RS00875 at 182.321 kb on + strand, within HSERO_RS00875 at 182.531 kb on - strand, within HSERO_RS00875 at 182.558 kb on + strand, within HSERO_RS00875 at 182.625 kb on - strand, within HSERO_RS00875 at 182.653 kb on - strand, within HSERO_RS00875 at 182.655 kb on + strand, within HSERO_RS00875
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 179,594 + HSERO_RS00860 0.82 +1.6 179,848 - HSERO_RS00865 0.13 -0.5 179,880 - HSERO_RS00865 0.20 +0.6 180,021 - HSERO_RS00865 0.50 +1.0 180,029 + HSERO_RS00865 0.52 +0.2 180,037 - HSERO_RS00865 0.53 +0.5 180,037 - HSERO_RS00865 0.53 -0.2 180,073 + HSERO_RS00865 0.61 -0.4 180,086 - HSERO_RS00865 0.64 +0.2 180,101 - HSERO_RS00865 0.67 +2.0 180,111 - HSERO_RS00865 0.69 +0.1 180,115 + -0.0 180,116 + HSERO_RS00865 0.70 -1.3 180,118 + HSERO_RS00865 0.71 -0.1 180,161 + HSERO_RS00865 0.80 +0.1 180,194 - HSERO_RS00865 0.87 -0.8 180,247 + -0.2 180,404 + +0.3 180,404 + -0.1 180,407 + +0.1 180,412 - +0.2 180,422 - +0.6 180,422 - -0.5 180,422 - -0.8 180,472 - +0.2 180,472 - -0.0 180,473 + -0.5 180,581 - +0.4 180,584 + -0.1 180,717 - HSERO_RS00870 0.13 +3.9 180,862 - HSERO_RS00870 0.26 -0.1 181,089 - HSERO_RS00870 0.46 +0.3 181,146 + HSERO_RS00870 0.51 -0.3 181,172 - HSERO_RS00870 0.53 -0.3 181,185 + HSERO_RS00870 0.54 -0.3 181,267 + HSERO_RS00870 0.61 +0.3 181,275 - HSERO_RS00870 0.62 -0.2 181,465 + HSERO_RS00870 0.79 -0.8 181,465 + HSERO_RS00870 0.79 -0.3 181,589 - HSERO_RS00870 0.90 +0.3 181,763 + -0.2 181,763 + +0.1 181,824 + +0.1 181,906 + -0.0 181,914 - +0.2 181,972 - +0.4 182,195 - HSERO_RS00875 0.26 +0.5 182,253 + HSERO_RS00875 0.31 +0.0 182,276 - HSERO_RS00875 0.34 +1.3 182,299 - HSERO_RS00875 0.36 -0.9 182,321 + HSERO_RS00875 0.38 +1.3 182,531 - HSERO_RS00875 0.59 -2.6 182,558 + HSERO_RS00875 0.62 +0.4 182,625 - HSERO_RS00875 0.68 -0.6 182,653 - HSERO_RS00875 0.71 -0.2 182,655 + HSERO_RS00875 0.71 +0.6
Or see this region's nucleotide sequence