Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00320 and HSERO_RS00325 are separated by 60 nucleotides HSERO_RS00325 and HSERO_RS00330 overlap by 4 nucleotides HSERO_RS00330 and HSERO_RS00335 are separated by 128 nucleotides HSERO_RS00335 and HSERO_RS00340 are separated by 431 nucleotides
HSERO_RS00320: HSERO_RS00320 - peptide ABC transporter ATP-binding protein, at 78,254 to 78,976
_RS00320
HSERO_RS00325: HSERO_RS00325 - multidrug DMT transporter permease, at 79,037 to 79,882
_RS00325
HSERO_RS00330: HSERO_RS00330 - SAM-dependent methyltransferase, at 79,879 to 80,556
_RS00330
HSERO_RS00335: HSERO_RS00335 - hypothetical protein, at 80,685 to 80,942
_RS00335
HSERO_RS00340: HSERO_RS00340 - XRE family transcriptional regulator, at 81,374 to 82,123
_RS00340
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 79.035 kb on + strand at 79.035 kb on + strand at 79.124 kb on - strand, within HSERO_RS00325 at 79.260 kb on - strand, within HSERO_RS00325 at 79.332 kb on - strand, within HSERO_RS00325 at 79.407 kb on - strand, within HSERO_RS00325 at 79.507 kb on - strand, within HSERO_RS00325 at 79.533 kb on + strand, within HSERO_RS00325 at 79.533 kb on + strand, within HSERO_RS00325 at 79.541 kb on - strand, within HSERO_RS00325 at 79.627 kb on - strand, within HSERO_RS00325 at 79.671 kb on - strand, within HSERO_RS00325 at 79.676 kb on + strand, within HSERO_RS00325 at 79.717 kb on + strand at 79.725 kb on - strand, within HSERO_RS00325 at 79.809 kb on + strand at 79.809 kb on + strand at 79.809 kb on + strand at 79.856 kb on - strand at 79.959 kb on + strand, within HSERO_RS00330 at 80.050 kb on - strand at 80.172 kb on - strand, within HSERO_RS00330 at 80.240 kb on + strand, within HSERO_RS00330 at 80.264 kb on - strand, within HSERO_RS00330 at 80.430 kb on + strand, within HSERO_RS00330 at 80.464 kb on - strand, within HSERO_RS00330 at 80.475 kb on - strand, within HSERO_RS00330 at 80.524 kb on + strand at 80.532 kb on - strand at 80.539 kb on + strand at 80.681 kb on - strand at 80.691 kb on - strand at 80.908 kb on + strand, within HSERO_RS00335 at 80.908 kb on + strand, within HSERO_RS00335 at 80.908 kb on + strand, within HSERO_RS00335 at 80.916 kb on - strand, within HSERO_RS00335 at 80.916 kb on - strand, within HSERO_RS00335 at 80.944 kb on - strand at 81.164 kb on + strand at 81.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 79,035 + -0.2 79,035 + -0.1 79,124 - HSERO_RS00325 0.10 -0.4 79,260 - HSERO_RS00325 0.26 -0.5 79,332 - HSERO_RS00325 0.35 +0.2 79,407 - HSERO_RS00325 0.44 +1.0 79,507 - HSERO_RS00325 0.56 +0.0 79,533 + HSERO_RS00325 0.59 -0.1 79,533 + HSERO_RS00325 0.59 +0.9 79,541 - HSERO_RS00325 0.60 -0.6 79,627 - HSERO_RS00325 0.70 -0.7 79,671 - HSERO_RS00325 0.75 -0.5 79,676 + HSERO_RS00325 0.76 +0.3 79,717 + +0.6 79,725 - HSERO_RS00325 0.81 +0.1 79,809 + +0.1 79,809 + +0.2 79,809 + -0.8 79,856 - +0.6 79,959 + HSERO_RS00330 0.12 -1.0 80,050 - +2.9 80,172 - HSERO_RS00330 0.43 +0.8 80,240 + HSERO_RS00330 0.53 +1.2 80,264 - HSERO_RS00330 0.57 +0.3 80,430 + HSERO_RS00330 0.81 +0.0 80,464 - HSERO_RS00330 0.86 +0.6 80,475 - HSERO_RS00330 0.88 +1.6 80,524 + +0.3 80,532 - -0.7 80,539 + +1.0 80,681 - +0.3 80,691 - +0.4 80,908 + HSERO_RS00335 0.86 +0.9 80,908 + HSERO_RS00335 0.86 -0.9 80,908 + HSERO_RS00335 0.86 +0.8 80,916 - HSERO_RS00335 0.90 -0.3 80,916 - HSERO_RS00335 0.90 -2.0 80,944 - +0.2 81,164 + -1.4 81,220 - +0.3
Or see this region's nucleotide sequence