Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08540 and PGA1_c08550 are separated by 115 nucleotides PGA1_c08550 and PGA1_c08560 are separated by 238 nucleotides PGA1_c08560 and PGA1_c08570 are separated by 222 nucleotides
PGA1_c08540: PGA1_c08540 - response regulator PleD, at 880,533 to 881,963
_c08540
PGA1_c08550: PGA1_c08550 - Protein of unknown function (DUF3572)., at 882,079 to 882,363
_c08550
PGA1_c08560: PGA1_c08560 - hydrolase, HAD-superfamily, at 882,602 to 883,291
_c08560
PGA1_c08570: PGA1_c08570 - putative trimethylamine methyltransferase, at 883,514 to 885,073
_c08570
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 881.814 kb on - strand, within PGA1_c08540 at 881.832 kb on + strand at 881.871 kb on - strand at 881.900 kb on + strand at 881.908 kb on - strand at 881.908 kb on - strand at 881.925 kb on + strand at 881.933 kb on - strand at 881.948 kb on + strand at 881.948 kb on + strand at 881.955 kb on + strand at 881.956 kb on - strand at 881.964 kb on - strand at 881.967 kb on + strand at 881.971 kb on - strand at 881.971 kb on - strand at 881.972 kb on + strand at 881.972 kb on + strand at 881.979 kb on - strand at 881.980 kb on - strand at 882.016 kb on + strand at 882.066 kb on - strand at 882.113 kb on - strand, within PGA1_c08550 at 882.179 kb on + strand, within PGA1_c08550 at 882.188 kb on + strand, within PGA1_c08550 at 882.348 kb on + strand at 882.391 kb on + strand at 882.398 kb on + strand at 882.408 kb on + strand at 882.472 kb on - strand at 882.525 kb on + strand at 882.539 kb on + strand at 882.560 kb on - strand at 882.567 kb on + strand at 882.567 kb on + strand at 882.575 kb on - strand at 882.575 kb on - strand at 882.575 kb on - strand at 882.592 kb on + strand at 882.593 kb on + strand at 882.606 kb on - strand at 882.639 kb on - strand at 882.668 kb on + strand at 882.692 kb on - strand, within PGA1_c08560 at 882.849 kb on - strand, within PGA1_c08560 at 882.898 kb on + strand, within PGA1_c08560 at 882.898 kb on + strand, within PGA1_c08560 at 882.946 kb on + strand, within PGA1_c08560 at 882.952 kb on + strand, within PGA1_c08560 at 882.960 kb on + strand, within PGA1_c08560 at 882.960 kb on - strand, within PGA1_c08560 at 883.019 kb on - strand, within PGA1_c08560 at 883.019 kb on - strand, within PGA1_c08560 at 883.210 kb on + strand, within PGA1_c08560 at 883.210 kb on + strand, within PGA1_c08560 at 883.210 kb on + strand, within PGA1_c08560 at 883.210 kb on + strand, within PGA1_c08560 at 883.218 kb on - strand, within PGA1_c08560 at 883.218 kb on - strand, within PGA1_c08560 at 883.308 kb on + strand at 883.308 kb on + strand at 883.422 kb on + strand at 883.430 kb on - strand at 883.496 kb on + strand at 883.496 kb on + strand at 883.499 kb on - strand at 883.513 kb on + strand at 883.605 kb on + strand at 883.618 kb on - strand at 883.620 kb on + strand at 883.640 kb on - strand at 883.715 kb on - strand, within PGA1_c08570 at 883.746 kb on - strand, within PGA1_c08570 at 883.759 kb on + strand, within PGA1_c08570 at 883.759 kb on + strand, within PGA1_c08570 at 883.760 kb on + strand, within PGA1_c08570 at 883.781 kb on - strand, within PGA1_c08570 at 883.851 kb on - strand, within PGA1_c08570 at 883.851 kb on - strand, within PGA1_c08570 at 883.942 kb on + strand, within PGA1_c08570 at 884.066 kb on + strand, within PGA1_c08570 at 884.100 kb on + strand, within PGA1_c08570 at 884.142 kb on - strand, within PGA1_c08570 at 884.180 kb on + strand, within PGA1_c08570 at 884.182 kb on + strand, within PGA1_c08570 at 884.188 kb on - strand, within PGA1_c08570
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 881,814 - PGA1_c08540 0.90 +0.3 881,832 + -1.8 881,871 - -1.7 881,900 + -1.9 881,908 - +1.0 881,908 - -0.1 881,925 + -2.4 881,933 - -0.7 881,948 + -1.8 881,948 + -0.4 881,955 + +0.3 881,956 - -0.5 881,964 - +0.1 881,967 + -1.1 881,971 - +1.5 881,971 - +1.6 881,972 + +1.1 881,972 + +0.3 881,979 - -2.4 881,980 - -1.3 882,016 + +1.4 882,066 - -0.2 882,113 - PGA1_c08550 0.12 +0.9 882,179 + PGA1_c08550 0.35 -1.8 882,188 + PGA1_c08550 0.38 -0.2 882,348 + -0.8 882,391 + -0.1 882,398 + -1.5 882,408 + -0.5 882,472 - +0.1 882,525 + -0.5 882,539 + -1.7 882,560 - -2.5 882,567 + +0.0 882,567 + +0.5 882,575 - +0.1 882,575 - +0.4 882,575 - -0.7 882,592 + -1.7 882,593 + +2.8 882,606 - -1.3 882,639 - +1.1 882,668 + +1.0 882,692 - PGA1_c08560 0.13 +0.2 882,849 - PGA1_c08560 0.36 -1.3 882,898 + PGA1_c08560 0.43 +0.2 882,898 + PGA1_c08560 0.43 -0.9 882,946 + PGA1_c08560 0.50 +2.5 882,952 + PGA1_c08560 0.51 -0.2 882,960 + PGA1_c08560 0.52 +0.5 882,960 - PGA1_c08560 0.52 -0.9 883,019 - PGA1_c08560 0.60 -0.5 883,019 - PGA1_c08560 0.60 -1.1 883,210 + PGA1_c08560 0.88 +0.4 883,210 + PGA1_c08560 0.88 +0.5 883,210 + PGA1_c08560 0.88 -1.1 883,210 + PGA1_c08560 0.88 +0.1 883,218 - PGA1_c08560 0.89 +0.1 883,218 - PGA1_c08560 0.89 -0.9 883,308 + +0.2 883,308 + +0.1 883,422 + -0.7 883,430 - -1.2 883,496 + +0.2 883,496 + +0.5 883,499 - -0.7 883,513 + -1.8 883,605 + -0.5 883,618 - +0.5 883,620 + +0.7 883,640 - +1.5 883,715 - PGA1_c08570 0.13 +1.5 883,746 - PGA1_c08570 0.15 +0.8 883,759 + PGA1_c08570 0.16 +0.6 883,759 + PGA1_c08570 0.16 +0.5 883,760 + PGA1_c08570 0.16 +0.5 883,781 - PGA1_c08570 0.17 +0.4 883,851 - PGA1_c08570 0.22 +0.8 883,851 - PGA1_c08570 0.22 -0.5 883,942 + PGA1_c08570 0.27 -1.6 884,066 + PGA1_c08570 0.35 +0.5 884,100 + PGA1_c08570 0.38 +1.5 884,142 - PGA1_c08570 0.40 +0.1 884,180 + PGA1_c08570 0.43 -0.8 884,182 + PGA1_c08570 0.43 +0.8 884,188 - PGA1_c08570 0.43 -2.5
Or see this region's nucleotide sequence