Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06150 and PGA1_c06160 are separated by 150 nucleotides PGA1_c06160 and PGA1_c06170 are separated by 91 nucleotides PGA1_c06170 and PGA1_c06180 are separated by 354 nucleotides PGA1_c06180 and PGA1_c06190 are separated by 137 nucleotides PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides
PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874
_c06150
PGA1_c06160: PGA1_c06160 - hypothetical protein, at 631,025 to 631,201
_c06160
PGA1_c06170: PGA1_c06170 - hypothetical protein, at 631,293 to 631,478
_c06170
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 630.835 kb on - strand at 630.863 kb on - strand at 630.863 kb on - strand at 630.884 kb on - strand at 630.890 kb on - strand at 630.961 kb on + strand at 630.963 kb on + strand at 631.018 kb on + strand at 631.021 kb on - strand at 631.026 kb on - strand at 631.044 kb on + strand, within PGA1_c06160 at 631.046 kb on + strand, within PGA1_c06160 at 631.085 kb on + strand, within PGA1_c06160 at 631.114 kb on - strand, within PGA1_c06160 at 631.147 kb on + strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.194 kb on - strand at 631.215 kb on + strand at 631.280 kb on + strand at 631.315 kb on - strand, within PGA1_c06170 at 631.322 kb on + strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.341 kb on + strand, within PGA1_c06170 at 631.389 kb on - strand, within PGA1_c06170 at 631.407 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.420 kb on - strand, within PGA1_c06170 at 631.440 kb on + strand, within PGA1_c06170 at 631.478 kb on + strand at 631.480 kb on + strand at 631.486 kb on - strand at 631.488 kb on + strand at 631.488 kb on + strand at 631.496 kb on - strand at 631.539 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.552 kb on - strand at 631.552 kb on - strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.567 kb on - strand at 631.568 kb on + strand at 631.569 kb on + strand at 631.569 kb on + strand at 631.576 kb on + strand at 631.576 kb on - strand at 631.576 kb on - strand at 631.591 kb on - strand at 631.593 kb on + strand at 631.610 kb on - strand at 631.610 kb on - strand at 631.624 kb on + strand at 631.632 kb on - strand at 631.634 kb on + strand at 631.634 kb on + strand at 631.642 kb on - strand at 631.673 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.730 kb on - strand at 631.845 kb on - strand at 631.865 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.897 kb on - strand at 631.920 kb on + strand at 631.920 kb on + strand at 631.928 kb on - strand, within PGA1_c06180 at 631.950 kb on - strand, within PGA1_c06180 at 631.959 kb on - strand, within PGA1_c06180 at 631.982 kb on + strand, within PGA1_c06180 at 631.985 kb on - strand, within PGA1_c06180 at 632.021 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.093 kb on + strand, within PGA1_c06180 at 632.140 kb on - strand, within PGA1_c06180 at 632.175 kb on - strand, within PGA1_c06180 at 632.200 kb on + strand, within PGA1_c06180 at 632.313 kb on + strand, within PGA1_c06180 at 632.334 kb on + strand, within PGA1_c06180 at 632.342 kb on - strand, within PGA1_c06180 at 632.353 kb on + strand, within PGA1_c06180 at 632.374 kb on - strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.434 kb on - strand, within PGA1_c06180 at 632.449 kb on + strand, within PGA1_c06180 at 632.473 kb on + strand, within PGA1_c06180 at 632.507 kb on - strand, within PGA1_c06180 at 632.519 kb on - strand, within PGA1_c06180 at 632.602 kb on - strand, within PGA1_c06180 at 632.618 kb on - strand, within PGA1_c06180 at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.711 kb on - strand at 632.713 kb on - strand at 632.721 kb on + strand at 632.742 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.774 kb on - strand at 632.776 kb on + strand at 632.776 kb on + strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.785 kb on - strand at 632.786 kb on - strand at 632.812 kb on + strand at 632.812 kb on + strand at 632.905 kb on - strand at 632.910 kb on + strand at 632.936 kb on + strand at 632.936 kb on + strand at 632.938 kb on + strand at 632.945 kb on - strand at 632.960 kb on + strand, within PGA1_c06190 at 632.966 kb on - strand, within PGA1_c06190 at 632.968 kb on + strand, within PGA1_c06190 at 632.976 kb on - strand, within PGA1_c06190 at 633.002 kb on + strand, within PGA1_c06190 at 633.010 kb on - strand, within PGA1_c06190 at 633.023 kb on + strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.039 kb on + strand, within PGA1_c06190 at 633.042 kb on - strand, within PGA1_c06190 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 630,835 - -1.8 630,863 - +1.7 630,863 - -0.2 630,884 - -0.2 630,890 - -0.8 630,961 + -0.0 630,963 + -0.3 631,018 + -0.6 631,021 - +1.4 631,026 - +0.3 631,044 + PGA1_c06160 0.11 -0.5 631,046 + PGA1_c06160 0.12 -0.5 631,085 + PGA1_c06160 0.34 -0.5 631,114 - PGA1_c06160 0.50 +0.6 631,147 + PGA1_c06160 0.69 -1.4 631,155 - PGA1_c06160 0.73 +0.2 631,155 - PGA1_c06160 0.73 -0.8 631,155 - PGA1_c06160 0.73 -1.6 631,194 - -1.2 631,215 + -0.8 631,280 + -0.0 631,315 - PGA1_c06170 0.12 -0.2 631,322 + PGA1_c06170 0.16 +1.6 631,330 - PGA1_c06170 0.20 -0.8 631,330 - PGA1_c06170 0.20 -0.8 631,330 - PGA1_c06170 0.20 -0.3 631,341 + PGA1_c06170 0.26 -0.2 631,389 - PGA1_c06170 0.52 -0.4 631,407 + PGA1_c06170 0.61 -0.2 631,412 + PGA1_c06170 0.64 -0.2 631,412 + PGA1_c06170 0.64 +0.6 631,420 - PGA1_c06170 0.68 -0.6 631,440 + PGA1_c06170 0.79 -1.5 631,478 + -1.2 631,480 + -0.2 631,486 - +0.2 631,488 + -0.2 631,488 + +0.6 631,496 - +0.6 631,539 + +1.6 631,544 + -0.0 631,544 + +0.6 631,544 + +0.2 631,544 + -0.4 631,544 + -0.8 631,544 + -1.0 631,544 + -1.0 631,544 + -0.8 631,544 + -0.0 631,544 + +2.6 631,552 - +0.7 631,552 - +0.8 631,554 + +1.0 631,554 + +0.1 631,554 + +0.3 631,554 + -0.0 631,554 + +1.6 631,557 - +1.9 631,557 - +0.2 631,557 - -1.8 631,562 - -0.2 631,562 - -0.3 631,562 - -1.0 631,562 - +0.3 631,562 - +0.6 631,567 - +0.3 631,568 + -0.0 631,569 + +1.6 631,569 + +0.6 631,576 + -2.0 631,576 - +1.0 631,576 - -0.8 631,591 - +1.6 631,593 + -0.6 631,610 - +0.6 631,610 - -1.0 631,624 + +0.7 631,632 - -0.8 631,634 + -0.5 631,634 + -0.4 631,642 - -0.6 631,673 - +0.7 631,721 - +3.0 631,721 - +0.9 631,721 - +1.0 631,730 - +0.1 631,845 - +0.6 631,865 + +1.2 631,870 + +0.6 631,870 + -0.5 631,870 + -1.8 631,897 - +1.0 631,920 + -1.6 631,920 + +0.1 631,928 - PGA1_c06180 0.10 +0.1 631,950 - PGA1_c06180 0.13 +1.5 631,959 - PGA1_c06180 0.14 -0.1 631,982 + PGA1_c06180 0.16 -0.2 631,985 - PGA1_c06180 0.16 +0.3 632,021 - PGA1_c06180 0.20 -1.1 632,080 - PGA1_c06180 0.27 -1.4 632,080 - PGA1_c06180 0.27 -0.0 632,093 + PGA1_c06180 0.28 -1.2 632,140 - PGA1_c06180 0.33 +0.2 632,175 - PGA1_c06180 0.37 -1.0 632,200 + PGA1_c06180 0.39 +0.6 632,313 + PGA1_c06180 0.52 +1.3 632,334 + PGA1_c06180 0.54 -0.0 632,342 - PGA1_c06180 0.55 +0.1 632,353 + PGA1_c06180 0.56 +1.6 632,374 - PGA1_c06180 0.58 -0.6 632,377 + PGA1_c06180 0.58 -0.2 632,377 + PGA1_c06180 0.58 -0.3 632,434 - PGA1_c06180 0.65 +0.6 632,449 + PGA1_c06180 0.66 +0.9 632,473 + PGA1_c06180 0.69 +1.6 632,507 - PGA1_c06180 0.72 -0.6 632,519 - PGA1_c06180 0.74 +4.1 632,602 - PGA1_c06180 0.83 -0.8 632,618 - PGA1_c06180 0.84 -1.2 632,705 + -0.6 632,705 + +1.0 632,705 + +1.6 632,705 + +0.3 632,705 + +0.6 632,711 - -0.4 632,713 - +0.6 632,721 + -0.4 632,742 + -0.0 632,768 + +1.0 632,768 + -0.2 632,768 + +0.7 632,768 + -1.4 632,768 + -1.2 632,768 + -0.6 632,768 + -0.8 632,768 + +0.2 632,768 + +1.1 632,768 + -0.0 632,768 + +0.0 632,768 + -1.1 632,768 + +0.1 632,768 + +0.6 632,768 + -2.8 632,768 + +1.6 632,768 + -0.2 632,768 + +1.0 632,768 + +1.3 632,768 + -0.9 632,768 + -0.9 632,768 + -1.8 632,768 + -1.0 632,768 + -1.0 632,768 + -1.1 632,768 + +1.0 632,768 + +1.1 632,768 + +1.8 632,768 + +0.8 632,768 + +0.1 632,768 + +0.2 632,768 + +1.4 632,768 + -0.8 632,768 + +0.2 632,768 + -0.8 632,768 + -1.4 632,768 + -0.2 632,768 + +0.3 632,768 + -1.1 632,768 + -0.3 632,768 + -1.8 632,768 + -1.4 632,768 + -0.4 632,768 + +1.3 632,768 + -1.3 632,768 + +0.4 632,768 + -0.5 632,768 + -0.2 632,768 + -0.6 632,768 + +1.0 632,768 + -1.6 632,768 + -0.0 632,768 + +0.6 632,768 + -1.0 632,768 + -0.2 632,768 + +1.2 632,768 + +1.4 632,768 + -0.2 632,768 + -0.0 632,768 + -1.2 632,768 + +0.9 632,768 + -0.0 632,768 + +1.1 632,768 + -0.4 632,768 + -0.2 632,768 + -0.7 632,768 + -0.6 632,768 + -0.2 632,768 + -0.8 632,768 + +0.4 632,768 + +0.2 632,768 + -0.2 632,768 + -1.9 632,768 + +0.6 632,768 + +0.6 632,768 + +0.1 632,768 + -1.2 632,768 + -1.5 632,768 + -0.4 632,768 + +0.3 632,768 + -0.2 632,768 + -1.2 632,768 + -1.2 632,768 + -0.7 632,768 + -0.9 632,768 + +0.3 632,768 + +1.1 632,768 + +1.9 632,768 + -0.0 632,774 - +0.6 632,776 + +1.6 632,776 + -1.8 632,776 - -0.8 632,776 - -0.4 632,776 - -0.0 632,776 - -0.6 632,776 - -0.2 632,776 - +0.9 632,776 - +0.8 632,776 - +1.6 632,776 - +1.4 632,776 - -0.5 632,776 - +0.3 632,776 - +1.6 632,776 - +0.0 632,776 - -0.9 632,776 - +0.6 632,776 - +0.3 632,776 - +0.2 632,776 - +1.2 632,776 - -0.6 632,776 - +1.6 632,776 - +0.4 632,776 - +2.1 632,776 - -2.8 632,776 - +0.2 632,776 - -0.2 632,776 - -0.8 632,776 - -0.5 632,776 - -0.2 632,776 - +0.2 632,776 - +0.6 632,776 - +0.1 632,776 - +0.8 632,776 - +1.8 632,776 - -2.6 632,776 - -1.0 632,776 - +0.2 632,776 - -0.4 632,776 - -0.0 632,776 - +2.4 632,776 - +1.1 632,776 - -0.0 632,776 - -0.8 632,776 - -1.8 632,776 - -0.4 632,776 - -0.6 632,776 - -1.2 632,776 - -0.8 632,776 - +0.8 632,776 - +0.2 632,776 - +2.0 632,776 - -1.9 632,776 - -1.6 632,776 - -1.0 632,776 - +1.6 632,776 - +0.1 632,776 - -1.2 632,776 - +0.1 632,784 - -0.9 632,784 - -1.9 632,784 - +0.4 632,784 - +1.9 632,784 - -0.9 632,785 - +0.8 632,786 - +2.2 632,812 + +0.6 632,812 + -0.0 632,905 - +0.6 632,910 + +0.2 632,936 + -0.7 632,936 + -0.3 632,938 + -2.6 632,945 - -0.9 632,960 + PGA1_c06190 0.12 -0.2 632,966 - PGA1_c06190 0.13 -0.4 632,968 + PGA1_c06190 0.14 +0.7 632,976 - PGA1_c06190 0.15 -0.2 633,002 + PGA1_c06190 0.21 -0.8 633,010 - PGA1_c06190 0.22 +2.6 633,023 + PGA1_c06190 0.25 +0.1 633,026 - PGA1_c06190 0.26 -0.6 633,026 - PGA1_c06190 0.26 -1.1 633,039 + PGA1_c06190 0.28 +0.8 633,042 - PGA1_c06190 0.29 -0.2 633,103 - PGA1_c06190 0.41 +0.8 633,121 + PGA1_c06190 0.45 +1.5 633,137 + PGA1_c06190 0.48 -1.0 633,184 - PGA1_c06190 0.58 +0.1 633,201 + PGA1_c06190 0.61 +1.2 633,201 + PGA1_c06190 0.61 +0.1 633,201 + PGA1_c06190 0.61 +0.1 633,220 + PGA1_c06190 0.65 -0.0 633,220 + PGA1_c06190 0.65 -1.2 633,222 + PGA1_c06190 0.65 +0.6 633,228 - PGA1_c06190 0.67 +0.3 633,257 - PGA1_c06190 0.73 +0.7 633,444 + +0.5 633,476 + +0.2 633,484 - -0.1 633,565 - PGA1_c06200 0.17 -0.0 633,610 - PGA1_c06200 0.24 +1.6 633,695 - PGA1_c06200 0.38 +1.1 633,705 + PGA1_c06200 0.40 -1.6 633,713 - PGA1_c06200 0.41 +1.7 633,731 + PGA1_c06200 0.44 -0.4
Or see this region's nucleotide sequence