Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00200

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00190 and PGA1_78p00200 are separated by 20 nucleotidesPGA1_78p00200 and PGA1_78p00210 are separated by 9 nucleotides PGA1_78p00190: PGA1_78p00190 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 22,202 to 23,287 _78p00190 PGA1_78p00200: PGA1_78p00200 - Sugar phosphate isomerases/epimerases, at 23,308 to 24,051 _78p00200 PGA1_78p00210: PGA1_78p00210 - putative oxidoreductase, at 24,061 to 25,194 _78p00210 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 22.427 kb on - strand, within PGA1_78p00190at 22.499 kb on + strand, within PGA1_78p00190at 22.861 kb on - strand, within PGA1_78p00190at 23.154 kb on - strand, within PGA1_78p00190at 23.781 kb on - strand, within PGA1_78p00200at 23.786 kb on - strand, within PGA1_78p00200at 24.221 kb on + strand, within PGA1_78p00210at 24.532 kb on - strand, within PGA1_78p00210at 24.597 kb on + strand, within PGA1_78p00210at 24.853 kb on - strand, within PGA1_78p00210at 25.032 kb on + strand, within PGA1_78p00210

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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22,427 - PGA1_78p00190 0.21 +0.5
22,499 + PGA1_78p00190 0.27 +1.2
22,861 - PGA1_78p00190 0.61 -2.1
23,154 - PGA1_78p00190 0.88 -1.5
23,781 - PGA1_78p00200 0.64 -2.7
23,786 - PGA1_78p00200 0.64 +0.5
24,221 + PGA1_78p00210 0.14 +1.5
24,532 - PGA1_78p00210 0.42 -0.2
24,597 + PGA1_78p00210 0.47 +1.5
24,853 - PGA1_78p00210 0.70 +0.8
25,032 + PGA1_78p00210 0.86 +2.1

Or see this region's nucleotide sequence