Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01730 and PGA1_262p01740 overlap by 4 nucleotides PGA1_262p01740 and PGA1_262p01750 are separated by 11 nucleotides PGA1_262p01750 and PGA1_262p01760 are separated by 26 nucleotides
PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808
_262p01730
PGA1_262p01740: PGA1_262p01740 - putative peptide ABC transporter, ATP-binding protein, at 190,805 to 191,734
_262p01740
PGA1_262p01750: PGA1_262p01750 - putative amidohydrolase, at 191,746 to 193,389
_262p01750
PGA1_262p01760: PGA1_262p01760 - epoxide hydrolase, similar to eukaryotic, at 193,416 to 194,588
_262p01760
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -1
0
1
2 at 190.781 kb on + strand at 190.809 kb on + strand at 190.849 kb on - strand at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.912 kb on - strand, within PGA1_262p01740 at 190.968 kb on - strand, within PGA1_262p01740 at 191.139 kb on + strand, within PGA1_262p01740 at 191.231 kb on - strand, within PGA1_262p01740 at 191.261 kb on - strand, within PGA1_262p01740 at 191.266 kb on - strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.327 kb on - strand, within PGA1_262p01740 at 191.375 kb on + strand, within PGA1_262p01740 at 191.410 kb on + strand, within PGA1_262p01740 at 191.418 kb on - strand, within PGA1_262p01740 at 191.457 kb on - strand, within PGA1_262p01740 at 191.520 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.609 kb on - strand, within PGA1_262p01740 at 191.671 kb on + strand at 191.744 kb on - strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.826 kb on - strand at 191.826 kb on - strand at 191.866 kb on - strand at 191.881 kb on + strand at 192.051 kb on - strand, within PGA1_262p01750 at 192.155 kb on - strand, within PGA1_262p01750 at 192.178 kb on - strand, within PGA1_262p01750 at 192.196 kb on + strand, within PGA1_262p01750 at 192.223 kb on + strand, within PGA1_262p01750 at 192.274 kb on + strand, within PGA1_262p01750 at 192.388 kb on + strand, within PGA1_262p01750 at 192.396 kb on - strand, within PGA1_262p01750 at 192.412 kb on + strand, within PGA1_262p01750 at 192.446 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.629 kb on + strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.668 kb on + strand, within PGA1_262p01750 at 192.876 kb on - strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.886 kb on - strand, within PGA1_262p01750 at 192.886 kb on - strand, within PGA1_262p01750 at 192.917 kb on + strand, within PGA1_262p01750 at 192.917 kb on + strand, within PGA1_262p01750 at 192.991 kb on + strand, within PGA1_262p01750 at 193.202 kb on - strand, within PGA1_262p01750 at 193.305 kb on - strand at 193.351 kb on - strand at 193.620 kb on - strand, within PGA1_262p01760 at 193.677 kb on - strand, within PGA1_262p01760 at 193.772 kb on + strand, within PGA1_262p01760 at 193.779 kb on + strand, within PGA1_262p01760 at 193.792 kb on - strand, within PGA1_262p01760 at 193.799 kb on + strand, within PGA1_262p01760 at 193.882 kb on + strand, within PGA1_262p01760 at 193.928 kb on - strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.973 kb on + strand, within PGA1_262p01760 at 193.987 kb on + strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.164 kb on + strand, within PGA1_262p01760 at 194.172 kb on - strand, within PGA1_262p01760 at 194.302 kb on + strand, within PGA1_262p01760 at 194.321 kb on + strand, within PGA1_262p01760
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 190,781 + +1.2 190,809 + -0.3 190,849 - -1.2 190,900 - PGA1_262p01740 0.10 -1.1 190,900 - PGA1_262p01740 0.10 -1.4 190,900 - PGA1_262p01740 0.10 +1.6 190,912 - PGA1_262p01740 0.12 -0.4 190,968 - PGA1_262p01740 0.18 +0.4 191,139 + PGA1_262p01740 0.36 -0.1 191,231 - PGA1_262p01740 0.46 -0.3 191,261 - PGA1_262p01740 0.49 +0.7 191,266 - PGA1_262p01740 0.50 -1.1 191,323 + PGA1_262p01740 0.56 -0.8 191,323 + PGA1_262p01740 0.56 -0.6 191,327 - PGA1_262p01740 0.56 +0.1 191,375 + PGA1_262p01740 0.61 +1.0 191,410 + PGA1_262p01740 0.65 -0.6 191,418 - PGA1_262p01740 0.66 -0.6 191,457 - PGA1_262p01740 0.70 +1.4 191,520 + PGA1_262p01740 0.77 -0.2 191,601 + PGA1_262p01740 0.86 +0.0 191,601 + PGA1_262p01740 0.86 +0.7 191,601 + PGA1_262p01740 0.86 -0.3 191,609 - PGA1_262p01740 0.86 -1.3 191,671 + +1.6 191,744 - +2.0 191,818 + -0.8 191,818 + +0.0 191,818 + +2.4 191,818 + +2.0 191,818 + -0.6 191,818 + +0.5 191,826 - -1.2 191,826 - +2.4 191,866 - +0.6 191,881 + -0.3 192,051 - PGA1_262p01750 0.19 -0.6 192,155 - PGA1_262p01750 0.25 +0.5 192,178 - PGA1_262p01750 0.26 +0.4 192,196 + PGA1_262p01750 0.27 +0.0 192,223 + PGA1_262p01750 0.29 +0.0 192,274 + PGA1_262p01750 0.32 +0.0 192,388 + PGA1_262p01750 0.39 +0.7 192,396 - PGA1_262p01750 0.40 +1.6 192,412 + PGA1_262p01750 0.41 +2.4 192,446 + PGA1_262p01750 0.43 -0.1 192,560 + PGA1_262p01750 0.50 -1.6 192,560 + PGA1_262p01750 0.50 +1.8 192,629 + PGA1_262p01750 0.54 +0.5 192,637 - PGA1_262p01750 0.54 -0.1 192,637 - PGA1_262p01750 0.54 -0.1 192,668 + PGA1_262p01750 0.56 +0.4 192,876 - PGA1_262p01750 0.69 +0.2 192,878 + PGA1_262p01750 0.69 +1.0 192,878 + PGA1_262p01750 0.69 +2.6 192,878 + PGA1_262p01750 0.69 +0.3 192,886 - PGA1_262p01750 0.69 +1.0 192,886 - PGA1_262p01750 0.69 +0.4 192,917 + PGA1_262p01750 0.71 -1.3 192,917 + PGA1_262p01750 0.71 -0.6 192,991 + PGA1_262p01750 0.76 -0.1 193,202 - PGA1_262p01750 0.89 +0.2 193,305 - +0.0 193,351 - +0.0 193,620 - PGA1_262p01760 0.17 +1.6 193,677 - PGA1_262p01760 0.22 -0.7 193,772 + PGA1_262p01760 0.30 -0.2 193,779 + PGA1_262p01760 0.31 -1.0 193,792 - PGA1_262p01760 0.32 -0.3 193,799 + PGA1_262p01760 0.33 -0.3 193,882 + PGA1_262p01760 0.40 +0.8 193,928 - PGA1_262p01760 0.44 +1.6 193,951 + PGA1_262p01760 0.46 +1.6 193,951 + PGA1_262p01760 0.46 +1.3 193,973 + PGA1_262p01760 0.47 +0.0 193,987 + PGA1_262p01760 0.49 +0.0 194,095 - PGA1_262p01760 0.58 +1.4 194,095 - PGA1_262p01760 0.58 +0.3 194,164 + PGA1_262p01760 0.64 -1.3 194,172 - PGA1_262p01760 0.64 +0.3 194,302 + PGA1_262p01760 0.76 -0.2 194,321 + PGA1_262p01760 0.77 -0.3
Or see this region's nucleotide sequence