Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00390 and PGA1_262p00400 overlap by 8 nucleotides PGA1_262p00400 and PGA1_262p00410 are separated by 11 nucleotides
PGA1_262p00390: PGA1_262p00390 - aldose 1-epimerase, at 46,465 to 47,523
_262p00390
PGA1_262p00400: PGA1_262p00400 - putative cytochrome c peroxidase, at 47,516 to 48,868
_262p00400
PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436
_262p00410
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 46.518 kb on + strand at 46.666 kb on - strand, within PGA1_262p00390 at 46.763 kb on + strand, within PGA1_262p00390 at 46.808 kb on - strand, within PGA1_262p00390 at 46.869 kb on + strand, within PGA1_262p00390 at 46.872 kb on + strand, within PGA1_262p00390 at 46.966 kb on - strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.976 kb on + strand, within PGA1_262p00390 at 47.066 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.337 kb on - strand, within PGA1_262p00390 at 47.406 kb on + strand, within PGA1_262p00390 at 47.555 kb on + strand at 47.573 kb on - strand at 47.573 kb on - strand at 47.596 kb on - strand at 47.681 kb on - strand, within PGA1_262p00400 at 47.739 kb on + strand, within PGA1_262p00400 at 47.762 kb on + strand, within PGA1_262p00400 at 47.771 kb on + strand, within PGA1_262p00400 at 47.881 kb on - strand, within PGA1_262p00400 at 48.265 kb on - strand, within PGA1_262p00400 at 48.426 kb on - strand, within PGA1_262p00400 at 48.885 kb on - strand at 49.066 kb on + strand, within PGA1_262p00410 at 49.089 kb on - strand, within PGA1_262p00410 at 49.091 kb on + strand, within PGA1_262p00410 at 49.133 kb on - strand, within PGA1_262p00410 at 49.185 kb on + strand, within PGA1_262p00410 at 49.233 kb on + strand, within PGA1_262p00410 at 49.312 kb on + strand, within PGA1_262p00410 at 49.626 kb on - strand, within PGA1_262p00410 at 49.720 kb on - strand, within PGA1_262p00410 at 49.805 kb on + strand, within PGA1_262p00410
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 46,518 + -0.5 46,666 - PGA1_262p00390 0.19 -2.0 46,763 + PGA1_262p00390 0.28 -1.3 46,808 - PGA1_262p00390 0.32 +0.0 46,869 + PGA1_262p00390 0.38 +1.6 46,872 + PGA1_262p00390 0.38 +0.9 46,966 - PGA1_262p00390 0.47 -0.1 46,971 + PGA1_262p00390 0.48 -0.4 46,971 + PGA1_262p00390 0.48 -0.1 46,971 + PGA1_262p00390 0.48 -1.1 46,976 + PGA1_262p00390 0.48 -0.6 47,066 + PGA1_262p00390 0.57 +0.6 47,329 + PGA1_262p00390 0.82 -0.8 47,329 + PGA1_262p00390 0.82 +1.8 47,329 + PGA1_262p00390 0.82 -0.8 47,337 - PGA1_262p00390 0.82 -1.0 47,406 + PGA1_262p00390 0.89 +0.0 47,555 + +0.8 47,573 - +1.3 47,573 - +0.0 47,596 - -0.3 47,681 - PGA1_262p00400 0.12 -1.3 47,739 + PGA1_262p00400 0.16 +0.0 47,762 + PGA1_262p00400 0.18 -1.0 47,771 + PGA1_262p00400 0.19 +1.0 47,881 - PGA1_262p00400 0.27 -0.4 48,265 - PGA1_262p00400 0.55 -1.1 48,426 - PGA1_262p00400 0.67 -2.6 48,885 - +0.3 49,066 + PGA1_262p00410 0.12 +0.4 49,089 - PGA1_262p00410 0.13 +0.5 49,091 + PGA1_262p00410 0.14 +1.6 49,133 - PGA1_262p00410 0.16 -1.0 49,185 + PGA1_262p00410 0.20 +0.5 49,233 + PGA1_262p00410 0.23 +1.4 49,312 + PGA1_262p00410 0.28 -0.4 49,626 - PGA1_262p00410 0.48 +3.8 49,720 - PGA1_262p00410 0.54 +0.9 49,805 + PGA1_262p00410 0.59 -0.2
Or see this region's nucleotide sequence