Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00120 and PGA1_262p00130 overlap by 97 nucleotides PGA1_262p00130 and PGA1_262p00140 are separated by 213 nucleotides
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
PGA1_262p00130: PGA1_262p00130 - hypothetical protein, at 15,451 to 16,515
_262p00130
PGA1_262p00140: PGA1_262p00140 - putative amino acid binding protein, at 16,729 to 17,889
_262p00140
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.505 kb on + strand, within PGA1_262p00120 at 14.513 kb on - strand, within PGA1_262p00120 at 14.566 kb on - strand, within PGA1_262p00120 at 14.762 kb on + strand, within PGA1_262p00120 at 14.770 kb on - strand, within PGA1_262p00120 at 14.840 kb on + strand, within PGA1_262p00120 at 14.859 kb on + strand, within PGA1_262p00120 at 14.867 kb on - strand, within PGA1_262p00120 at 14.937 kb on - strand, within PGA1_262p00120 at 15.003 kb on + strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.130 kb on - strand, within PGA1_262p00120 at 15.295 kb on - strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.357 kb on + strand, within PGA1_262p00120 at 15.441 kb on - strand at 15.500 kb on - strand at 15.579 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.767 kb on - strand, within PGA1_262p00130 at 15.871 kb on - strand, within PGA1_262p00130 at 16.102 kb on + strand, within PGA1_262p00130 at 16.137 kb on + strand, within PGA1_262p00130 at 16.253 kb on + strand, within PGA1_262p00130 at 16.280 kb on + strand, within PGA1_262p00130 at 16.385 kb on + strand, within PGA1_262p00130 at 16.423 kb on + strand at 16.483 kb on - strand at 16.483 kb on - strand at 16.524 kb on + strand at 16.566 kb on - strand at 16.587 kb on + strand at 16.588 kb on + strand at 16.677 kb on + strand at 16.707 kb on - strand at 16.767 kb on - strand at 16.789 kb on - strand at 16.798 kb on - strand at 16.813 kb on + strand at 16.897 kb on + strand, within PGA1_262p00140 at 16.925 kb on + strand, within PGA1_262p00140 at 16.927 kb on + strand, within PGA1_262p00140 at 16.985 kb on - strand, within PGA1_262p00140 at 17.034 kb on + strand, within PGA1_262p00140 at 17.090 kb on - strand, within PGA1_262p00140 at 17.261 kb on - strand, within PGA1_262p00140 at 17.270 kb on + strand, within PGA1_262p00140 at 17.288 kb on - strand, within PGA1_262p00140 at 17.412 kb on + strand, within PGA1_262p00140 at 17.414 kb on - strand, within PGA1_262p00140 at 17.511 kb on - strand, within PGA1_262p00140
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 14,505 + PGA1_262p00120 0.12 +1.0 14,513 - PGA1_262p00120 0.12 +1.3 14,566 - PGA1_262p00120 0.17 +0.8 14,762 + PGA1_262p00120 0.34 -0.4 14,770 - PGA1_262p00120 0.34 +0.2 14,840 + PGA1_262p00120 0.40 -0.6 14,859 + PGA1_262p00120 0.42 +1.8 14,867 - PGA1_262p00120 0.42 +0.6 14,937 - PGA1_262p00120 0.48 +0.7 15,003 + PGA1_262p00120 0.54 -0.6 15,037 - PGA1_262p00120 0.57 -1.0 15,037 - PGA1_262p00120 0.57 +0.0 15,130 - PGA1_262p00120 0.65 +0.0 15,295 - PGA1_262p00120 0.79 +1.6 15,331 + PGA1_262p00120 0.82 +1.6 15,331 + PGA1_262p00120 0.82 +0.8 15,357 + PGA1_262p00120 0.84 +1.2 15,441 - -1.0 15,500 - +0.8 15,579 + PGA1_262p00130 0.12 -1.0 15,629 + PGA1_262p00130 0.17 +1.0 15,629 + PGA1_262p00130 0.17 +0.0 15,629 + PGA1_262p00130 0.17 -0.6 15,629 + PGA1_262p00130 0.17 +0.0 15,629 + PGA1_262p00130 0.17 -0.6 15,637 - PGA1_262p00130 0.17 -2.8 15,637 - PGA1_262p00130 0.17 +0.6 15,637 - PGA1_262p00130 0.17 -0.1 15,637 - PGA1_262p00130 0.17 +1.0 15,767 - PGA1_262p00130 0.30 -0.1 15,871 - PGA1_262p00130 0.39 +0.0 16,102 + PGA1_262p00130 0.61 -0.1 16,137 + PGA1_262p00130 0.64 -0.8 16,253 + PGA1_262p00130 0.75 -1.0 16,280 + PGA1_262p00130 0.78 -0.3 16,385 + PGA1_262p00130 0.88 -1.6 16,423 + +1.4 16,483 - +0.2 16,483 - -1.0 16,524 + -2.0 16,566 - +0.5 16,587 + -0.8 16,588 + +1.0 16,677 + -0.1 16,707 - +0.0 16,767 - -1.1 16,789 - +0.0 16,798 - -1.4 16,813 + -0.5 16,897 + PGA1_262p00140 0.14 +0.8 16,925 + PGA1_262p00140 0.17 +0.3 16,927 + PGA1_262p00140 0.17 +1.0 16,985 - PGA1_262p00140 0.22 +0.7 17,034 + PGA1_262p00140 0.26 +0.5 17,090 - PGA1_262p00140 0.31 -0.1 17,261 - PGA1_262p00140 0.46 -1.1 17,270 + PGA1_262p00140 0.47 +1.2 17,288 - PGA1_262p00140 0.48 -0.3 17,412 + PGA1_262p00140 0.59 +0.8 17,414 - PGA1_262p00140 0.59 -0.6 17,511 - PGA1_262p00140 0.67 +0.4
Or see this region's nucleotide sequence