Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24330

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24320 and PGA1_c24330 are separated by 4 nucleotidesPGA1_c24330 and PGA1_c24340 are separated by 21 nucleotides PGA1_c24320: PGA1_c24320 - putative capsule polysaccharide export inner-membrane protein, at 2,536,798 to 2,538,504 _c24320 PGA1_c24330: PGA1_c24330 - 2-dehydro-3-deoxyphosphooctonate aldolase KdsA, at 2,538,509 to 2,539,342 _c24330 PGA1_c24340: PGA1_c24340 - phosphomannomutase/phosphoglucomutase AlgC, at 2,539,364 to 2,540,860 _c24340 Position (kb) 2538 2539 2540Strain fitness (log2 ratio) -1 0 1 2 3 4at 2537.537 kb on - strand, within PGA1_c24320at 2537.574 kb on + strand, within PGA1_c24320at 2537.612 kb on - strand, within PGA1_c24320at 2537.625 kb on - strand, within PGA1_c24320at 2537.694 kb on + strand, within PGA1_c24320at 2537.702 kb on - strand, within PGA1_c24320at 2537.703 kb on - strand, within PGA1_c24320at 2537.707 kb on - strand, within PGA1_c24320at 2537.707 kb on - strand, within PGA1_c24320at 2537.724 kb on + strand, within PGA1_c24320at 2537.805 kb on - strand, within PGA1_c24320at 2537.822 kb on - strand, within PGA1_c24320at 2537.835 kb on + strand, within PGA1_c24320at 2537.835 kb on + strand, within PGA1_c24320at 2537.835 kb on + strand, within PGA1_c24320at 2537.843 kb on - strand, within PGA1_c24320at 2537.843 kb on - strand, within PGA1_c24320at 2537.867 kb on + strand, within PGA1_c24320at 2537.885 kb on - strand, within PGA1_c24320at 2537.984 kb on - strand, within PGA1_c24320at 2537.990 kb on + strand, within PGA1_c24320at 2538.059 kb on - strand, within PGA1_c24320at 2538.129 kb on + strand, within PGA1_c24320at 2538.137 kb on - strand, within PGA1_c24320at 2538.137 kb on - strand, within PGA1_c24320at 2538.236 kb on + strand, within PGA1_c24320at 2538.236 kb on + strand, within PGA1_c24320at 2538.264 kb on + strand, within PGA1_c24320at 2538.316 kb on + strand, within PGA1_c24320at 2538.316 kb on + strand, within PGA1_c24320at 2538.324 kb on - strand, within PGA1_c24320at 2538.340 kb on + strandat 2538.366 kb on + strandat 2538.374 kb on - strandat 2539.323 kb on - strandat 2539.339 kb on - strandat 2539.890 kb on - strand, within PGA1_c24340at 2539.969 kb on - strand, within PGA1_c24340

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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2,537,537 - PGA1_c24320 0.43 +1.5
2,537,574 + PGA1_c24320 0.45 +0.4
2,537,612 - PGA1_c24320 0.48 +2.4
2,537,625 - PGA1_c24320 0.48 +1.1
2,537,694 + PGA1_c24320 0.52 +0.6
2,537,702 - PGA1_c24320 0.53 +0.7
2,537,703 - PGA1_c24320 0.53 +0.9
2,537,707 - PGA1_c24320 0.53 -0.8
2,537,707 - PGA1_c24320 0.53 +1.5
2,537,724 + PGA1_c24320 0.54 +1.7
2,537,805 - PGA1_c24320 0.59 +4.7
2,537,822 - PGA1_c24320 0.60 +2.2
2,537,835 + PGA1_c24320 0.61 +1.8
2,537,835 + PGA1_c24320 0.61 +0.8
2,537,835 + PGA1_c24320 0.61 +2.4
2,537,843 - PGA1_c24320 0.61 +1.9
2,537,843 - PGA1_c24320 0.61 +1.7
2,537,867 + PGA1_c24320 0.63 +1.4
2,537,885 - PGA1_c24320 0.64 +1.2
2,537,984 - PGA1_c24320 0.69 +2.7
2,537,990 + PGA1_c24320 0.70 +0.2
2,538,059 - PGA1_c24320 0.74 +0.4
2,538,129 + PGA1_c24320 0.78 +1.6
2,538,137 - PGA1_c24320 0.78 +2.2
2,538,137 - PGA1_c24320 0.78 +0.7
2,538,236 + PGA1_c24320 0.84 +1.1
2,538,236 + PGA1_c24320 0.84 +0.4
2,538,264 + PGA1_c24320 0.86 +2.5
2,538,316 + PGA1_c24320 0.89 +1.7
2,538,316 + PGA1_c24320 0.89 +0.7
2,538,324 - PGA1_c24320 0.89 +1.9
2,538,340 + +1.7
2,538,366 + +0.7
2,538,374 - +0.5
2,539,323 - -0.1
2,539,339 - +0.5
2,539,890 - PGA1_c24340 0.35 +0.5
2,539,969 - PGA1_c24340 0.40 +1.5

Or see this region's nucleotide sequence