Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24320 and PGA1_c24330 are separated by 4 nucleotides PGA1_c24330 and PGA1_c24340 are separated by 21 nucleotides
PGA1_c24320: PGA1_c24320 - putative capsule polysaccharide export inner-membrane protein, at 2,536,798 to 2,538,504
_c24320
PGA1_c24330: PGA1_c24330 - 2-dehydro-3-deoxyphosphooctonate aldolase KdsA, at 2,538,509 to 2,539,342
_c24330
PGA1_c24340: PGA1_c24340 - phosphomannomutase/phosphoglucomutase AlgC, at 2,539,364 to 2,540,860
_c24340
Position (kb)
2538
2539
2540 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2537.537 kb on - strand, within PGA1_c24320 at 2537.574 kb on + strand, within PGA1_c24320 at 2537.612 kb on - strand, within PGA1_c24320 at 2537.625 kb on - strand, within PGA1_c24320 at 2537.694 kb on + strand, within PGA1_c24320 at 2537.702 kb on - strand, within PGA1_c24320 at 2537.703 kb on - strand, within PGA1_c24320 at 2537.707 kb on - strand, within PGA1_c24320 at 2537.707 kb on - strand, within PGA1_c24320 at 2537.724 kb on + strand, within PGA1_c24320 at 2537.805 kb on - strand, within PGA1_c24320 at 2537.822 kb on - strand, within PGA1_c24320 at 2537.835 kb on + strand, within PGA1_c24320 at 2537.835 kb on + strand, within PGA1_c24320 at 2537.835 kb on + strand, within PGA1_c24320 at 2537.843 kb on - strand, within PGA1_c24320 at 2537.843 kb on - strand, within PGA1_c24320 at 2537.867 kb on + strand, within PGA1_c24320 at 2537.885 kb on - strand, within PGA1_c24320 at 2537.984 kb on - strand, within PGA1_c24320 at 2537.990 kb on + strand, within PGA1_c24320 at 2538.059 kb on - strand, within PGA1_c24320 at 2538.129 kb on + strand, within PGA1_c24320 at 2538.137 kb on - strand, within PGA1_c24320 at 2538.137 kb on - strand, within PGA1_c24320 at 2538.236 kb on + strand, within PGA1_c24320 at 2538.236 kb on + strand, within PGA1_c24320 at 2538.264 kb on + strand, within PGA1_c24320 at 2538.316 kb on + strand, within PGA1_c24320 at 2538.316 kb on + strand, within PGA1_c24320 at 2538.324 kb on - strand, within PGA1_c24320 at 2538.340 kb on + strand at 2538.366 kb on + strand at 2538.374 kb on - strand at 2539.323 kb on - strand at 2539.339 kb on - strand at 2539.890 kb on - strand, within PGA1_c24340 at 2539.969 kb on - strand, within PGA1_c24340
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 2,537,537 - PGA1_c24320 0.43 +1.5 2,537,574 + PGA1_c24320 0.45 +0.4 2,537,612 - PGA1_c24320 0.48 +2.4 2,537,625 - PGA1_c24320 0.48 +1.1 2,537,694 + PGA1_c24320 0.52 +0.6 2,537,702 - PGA1_c24320 0.53 +0.7 2,537,703 - PGA1_c24320 0.53 +0.9 2,537,707 - PGA1_c24320 0.53 -0.8 2,537,707 - PGA1_c24320 0.53 +1.5 2,537,724 + PGA1_c24320 0.54 +1.7 2,537,805 - PGA1_c24320 0.59 +4.7 2,537,822 - PGA1_c24320 0.60 +2.2 2,537,835 + PGA1_c24320 0.61 +1.8 2,537,835 + PGA1_c24320 0.61 +0.8 2,537,835 + PGA1_c24320 0.61 +2.4 2,537,843 - PGA1_c24320 0.61 +1.9 2,537,843 - PGA1_c24320 0.61 +1.7 2,537,867 + PGA1_c24320 0.63 +1.4 2,537,885 - PGA1_c24320 0.64 +1.2 2,537,984 - PGA1_c24320 0.69 +2.7 2,537,990 + PGA1_c24320 0.70 +0.2 2,538,059 - PGA1_c24320 0.74 +0.4 2,538,129 + PGA1_c24320 0.78 +1.6 2,538,137 - PGA1_c24320 0.78 +2.2 2,538,137 - PGA1_c24320 0.78 +0.7 2,538,236 + PGA1_c24320 0.84 +1.1 2,538,236 + PGA1_c24320 0.84 +0.4 2,538,264 + PGA1_c24320 0.86 +2.5 2,538,316 + PGA1_c24320 0.89 +1.7 2,538,316 + PGA1_c24320 0.89 +0.7 2,538,324 - PGA1_c24320 0.89 +1.9 2,538,340 + +1.7 2,538,366 + +0.7 2,538,374 - +0.5 2,539,323 - -0.1 2,539,339 - +0.5 2,539,890 - PGA1_c24340 0.35 +0.5 2,539,969 - PGA1_c24340 0.40 +1.5
Or see this region's nucleotide sequence