Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13810

Experiment: No vitamins t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	No vitamins t2
1,426,468	-				+0.2
1,426,468	-				+0.4
1,426,468	-				-0.3
1,426,472	+				+2.1
1,426,475	-				+1.5
1,426,477	+				+0.4
1,426,477	+				-0.1
1,426,482	+				-0.6
1,426,490	-				+0.3
1,426,563	-		PGA1_c13800	0.12	-0.3
1,426,590	+		PGA1_c13800	0.15	-0.7
1,426,600	+		PGA1_c13800	0.16	+1.2
1,426,600	+		PGA1_c13800	0.16	+1.5
1,426,615	-		PGA1_c13800	0.17	+0.5
1,426,660	-		PGA1_c13800	0.22	+2.5
1,426,663	+		PGA1_c13800	0.22	+2.3
1,426,664	-		PGA1_c13800	0.22	+1.0
1,426,887	-		PGA1_c13800	0.45	+0.9
1,426,923	+		PGA1_c13800	0.48	-0.4
1,426,986	-		PGA1_c13800	0.55	+0.8
1,426,991	+		PGA1_c13800	0.55	-0.3
1,426,991	+		PGA1_c13800	0.55	+0.5
1,427,001	+		PGA1_c13800	0.56	+1.2
1,427,009	-		PGA1_c13800	0.57	+1.5
1,427,009	-		PGA1_c13800	0.57	+2.2
1,427,009	-		PGA1_c13800	0.57	+0.8
1,427,042	+		PGA1_c13800	0.60	-0.2
1,427,102	+		PGA1_c13800	0.66	-0.1
1,427,119	+		PGA1_c13800	0.68	+0.6
1,427,127	-		PGA1_c13800	0.69	+1.2
1,427,159	+		PGA1_c13800	0.72	+0.8
1,427,159	+		PGA1_c13800	0.72	+1.5
1,427,159	+		PGA1_c13800	0.72	+1.2
1,427,159	+		PGA1_c13800	0.72	+1.0
1,427,159	+		PGA1_c13800	0.72	-0.3
1,427,159	+		PGA1_c13800	0.72	+0.2
1,427,167	-		PGA1_c13800	0.73	+0.7
1,427,192	-		PGA1_c13800	0.76	-0.8
1,427,194	+		PGA1_c13800	0.76	+0.5
1,427,194	+		PGA1_c13800	0.76	+0.8
1,427,194	+		PGA1_c13800	0.76	-0.3
1,427,194	+		PGA1_c13800	0.76	+0.3
1,427,194	+		PGA1_c13800	0.76	+1.6
1,427,202	-		PGA1_c13800	0.77	+0.4
1,427,202	-		PGA1_c13800	0.77	+0.2
1,427,263	+		PGA1_c13800	0.83	+0.3
1,427,271	+		PGA1_c13800	0.83	+2.1
1,427,271	-		PGA1_c13800	0.83	-0.3
1,427,295	+		PGA1_c13800	0.86	+1.2
1,427,303	-		PGA1_c13800	0.87	+0.2
1,427,303	-		PGA1_c13800	0.87	-0.3
1,427,357	-				+2.7
1,427,363	-				+1.7
1,427,363	-				+0.8
1,427,376	+				-1.7
1,427,386	+				+1.5
1,427,386	+				-0.0
1,427,389	-				-0.7
1,427,394	-				+0.4
1,427,394	-				-0.5
1,427,431	-				-0.9
1,427,436	-				+1.1
1,427,461	+				+1.2
1,427,475	+				-0.2
1,427,483	-				+1.1
1,427,503	-				-0.5
1,427,565	-		PGA1_c13810	0.10	+0.6
1,427,594	+		PGA1_c13810	0.13	+0.7
1,427,594	+		PGA1_c13810	0.13	+0.6
1,427,650	+		PGA1_c13810	0.18	+0.7
1,427,699	+		PGA1_c13810	0.22	-1.5
1,427,707	-		PGA1_c13810	0.23	+2.1
1,427,707	-		PGA1_c13810	0.23	+0.4
1,427,730	+		PGA1_c13810	0.25	+0.6
1,427,730	+		PGA1_c13810	0.25	+1.3
1,427,730	+		PGA1_c13810	0.25	+0.6
1,427,735	+		PGA1_c13810	0.25	+1.7
1,427,738	-		PGA1_c13810	0.25	-0.3
1,427,738	-		PGA1_c13810	0.25	+0.1
1,427,738	-		PGA1_c13810	0.25	-0.1
1,427,788	+		PGA1_c13810	0.30	-1.1
1,427,790	+		PGA1_c13810	0.30	+0.3
1,427,798	-		PGA1_c13810	0.30	+0.4
1,427,798	-		PGA1_c13810	0.30	-0.2
1,427,824	-		PGA1_c13810	0.33	+1.0
1,427,852	+		PGA1_c13810	0.35	+1.3
1,427,865	+		PGA1_c13810	0.36	+1.0
1,427,972	+		PGA1_c13810	0.45	-2.1
1,427,980	-		PGA1_c13810	0.46	+0.1
1,427,980	-		PGA1_c13810	0.46	+2.0
1,427,996	+		PGA1_c13810	0.47	+0.1
1,427,996	+		PGA1_c13810	0.47	-0.1
1,427,996	+		PGA1_c13810	0.47	-0.2
1,427,997	-		PGA1_c13810	0.48	-0.1
1,427,997	-		PGA1_c13810	0.48	+0.7
1,428,079	+		PGA1_c13810	0.55	+0.5
1,428,126	-		PGA1_c13810	0.59	-0.9
1,428,163	-		PGA1_c13810	0.62	+0.7
1,428,203	+		PGA1_c13810	0.65	-0.5
1,428,211	-		PGA1_c13810	0.66	+1.6
1,428,237	+		PGA1_c13810	0.68	+0.5
1,428,245	-		PGA1_c13810	0.69	+1.6
1,428,245	-		PGA1_c13810	0.69	-0.7
1,428,247	+		PGA1_c13810	0.69	+1.9
1,428,252	+		PGA1_c13810	0.69	+1.4
1,428,252	+		PGA1_c13810	0.69	+0.9
1,428,252	+		PGA1_c13810	0.69	+1.1
1,428,252	+		PGA1_c13810	0.69	+1.5
1,428,252	+		PGA1_c13810	0.69	+0.1
1,428,255	-		PGA1_c13810	0.70	+2.2
1,428,257	+		PGA1_c13810	0.70	+1.1
1,428,260	-		PGA1_c13810	0.70	+0.7
1,428,260	-		PGA1_c13810	0.70	+1.0
1,428,260	-		PGA1_c13810	0.70	+1.7
1,428,260	-		PGA1_c13810	0.70	+2.7
1,428,260	-		PGA1_c13810	0.70	-0.5
1,428,265	-		PGA1_c13810	0.71	+1.6
1,428,316	+		PGA1_c13810	0.75	+0.0
1,428,322	-		PGA1_c13810	0.75	+0.8
1,428,376	+		PGA1_c13810	0.80	+0.3
1,428,418	+		PGA1_c13810	0.84	+0.2
1,428,418	+		PGA1_c13810	0.84	-0.1
1,428,423	+		PGA1_c13810	0.84	+1.1
1,428,423	+		PGA1_c13810	0.84	-1.7
1,428,426	-		PGA1_c13810	0.84	-0.6
1,428,430	+		PGA1_c13810	0.85	+0.5
1,428,438	-		PGA1_c13810	0.85	+2.2
1,428,518	+				+1.6
1,428,526	-				+1.1
1,428,604	+				-0.3
1,428,612	+				-0.4
1,428,685	+				-0.2
1,428,693	-				-1.1
1,428,742	-		PGA1_c13820	0.16	-0.4
1,428,852	+		PGA1_c13820	0.30	-1.2
1,428,858	+		PGA1_c13820	0.31	-2.0
1,428,866	-		PGA1_c13820	0.32	-0.7
1,428,881	+		PGA1_c13820	0.34	-0.5
1,428,884	-		PGA1_c13820	0.35	-0.3
1,428,911	+		PGA1_c13820	0.38	-0.4
1,428,919	-		PGA1_c13820	0.39	-1.7
1,428,962	+		PGA1_c13820	0.45	-1.3
1,429,015	-		PGA1_c13820	0.52	-1.1
1,429,059	+		PGA1_c13820	0.57	-0.9
1,429,067	-		PGA1_c13820	0.58	-2.2
1,429,075	+		PGA1_c13820	0.59	+1.2
1,429,075	+		PGA1_c13820	0.59	-2.1
1,429,083	-		PGA1_c13820	0.60	-1.3
1,429,099	-		PGA1_c13820	0.62	-0.1
1,429,109	-		PGA1_c13820	0.64	-0.1
1,429,138	+		PGA1_c13820	0.67	-0.9
1,429,138	+		PGA1_c13820	0.67	-1.1
1,429,138	+		PGA1_c13820	0.67	-1.7
1,429,139	+		PGA1_c13820	0.68	-0.5
1,429,139	-		PGA1_c13820	0.68	-1.3
1,429,145	+		PGA1_c13820	0.68	-0.1
1,429,146	-		PGA1_c13820	0.68	+0.5
1,429,146	-		PGA1_c13820	0.68	-0.3
1,429,146	-		PGA1_c13820	0.68	-0.5
1,429,153	-		PGA1_c13820	0.69	+0.1
1,429,181	+		PGA1_c13820	0.73	-2.4
1,429,191	-		PGA1_c13820	0.74	-1.3
1,429,193	+		PGA1_c13820	0.75	-2.2
1,429,201	-		PGA1_c13820	0.76	-1.6
1,429,209	-		PGA1_c13820	0.77	-0.5
1,429,226	-		PGA1_c13820	0.79	-2.2
1,429,226	-		PGA1_c13820	0.79	-0.9
1,429,226	-		PGA1_c13820	0.79	-0.9
1,429,231	-		PGA1_c13820	0.79	+0.5
1,429,231	-		PGA1_c13820	0.79	-0.0
1,429,247	+		PGA1_c13820	0.82	-0.7
1,429,255	-		PGA1_c13820	0.83	-1.0
1,429,255	-		PGA1_c13820	0.83	-0.7
1,429,255	-		PGA1_c13820	0.83	-0.7
1,429,274	-		PGA1_c13820	0.85	+0.1
1,429,279	-		PGA1_c13820	0.86	-1.3
1,429,337	+				-0.2
1,429,352	+				+0.4
1,429,383	+				+0.6
1,429,413	+				-1.1
1,429,421	-				-0.5
1,429,459	-				+0.7
1,429,459	-				+1.1
1,429,526	+				-1.5
1,429,585	-				-0.9
1,429,585	-				-0.1
1,429,601	+		PGA1_c13830	0.10	+0.8