Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18955

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
2,026,950	-		BBR_RS18950	0.21	-0.9
2,026,950	-		BBR_RS18950	0.21	-2.4
2,026,950	-		BBR_RS18950	0.21	-0.4
2,026,950	-		BBR_RS18950	0.21	+0.2
2,026,966	+		BBR_RS18950	0.23	+0.0
2,026,985	+		BBR_RS18950	0.25	-3.1
2,026,992	+		BBR_RS18950	0.26	+0.1
2,026,992	+		BBR_RS18950	0.26	+0.4
2,027,037	+		BBR_RS18950	0.31	+1.3
2,027,043	-		BBR_RS18950	0.31	+0.3
2,027,043	-		BBR_RS18950	0.31	-0.8
2,027,043	-		BBR_RS18950	0.31	+2.0
2,027,045	-		BBR_RS18950	0.31	+0.1
2,027,045	-		BBR_RS18950	0.31	-2.1
2,027,047	+		BBR_RS18950	0.32	-0.2
2,027,052	+		BBR_RS18950	0.32	+1.2
2,027,055	-		BBR_RS18950	0.33	-1.7
2,027,055	-		BBR_RS18950	0.33	+0.1
2,027,055	-		BBR_RS18950	0.33	-0.5
2,027,057	+		BBR_RS18950	0.33	-0.7
2,027,057	+		BBR_RS18950	0.33	-0.5
2,027,057	+		BBR_RS18950	0.33	+0.8
2,027,065	-		BBR_RS18950	0.34	+1.1
2,027,065	-		BBR_RS18950	0.34	+0.8
2,027,065	-		BBR_RS18950	0.34	-0.6
2,027,065	-		BBR_RS18950	0.34	-1.8
2,027,065	-		BBR_RS18950	0.34	+2.0
2,027,065	-		BBR_RS18950	0.34	-1.5
2,027,065	-		BBR_RS18950	0.34	-1.9
2,027,065	-		BBR_RS18950	0.34	+0.2
2,027,082	-		BBR_RS18950	0.36	-0.3
2,027,090	-		BBR_RS18950	0.36	+2.2
2,027,118	+		BBR_RS18950	0.40	+0.6
2,027,120	+		BBR_RS18950	0.40	-0.3
2,027,128	-		BBR_RS18950	0.41	+1.3
2,027,161	+		BBR_RS18950	0.44	+1.7
2,027,177	+		BBR_RS18950	0.46	-0.8
2,027,177	+		BBR_RS18950	0.46	-0.4
2,027,192	+		BBR_RS18950	0.48	-1.3
2,027,192	+		BBR_RS18950	0.48	-0.4
2,027,200	+		BBR_RS18950	0.49	-1.3
2,027,200	+		BBR_RS18950	0.49	-2.7
2,027,205	+		BBR_RS18950	0.49	+1.4
2,027,205	+		BBR_RS18950	0.49	+0.5
2,027,205	+		BBR_RS18950	0.49	+3.4
2,027,205	+		BBR_RS18950	0.49	+0.3
2,027,205	+		BBR_RS18950	0.49	-1.0
2,027,210	+		BBR_RS18950	0.50	-3.4
2,027,213	-		BBR_RS18950	0.50	+0.9
2,027,223	-		BBR_RS18950	0.51	+1.1
2,027,233	-		BBR_RS18950	0.52	-1.6
2,027,254	+		BBR_RS18950	0.55	+0.3
2,027,264	-		BBR_RS18950	0.56	+3.0
2,027,298	+		BBR_RS18950	0.60	-0.5
2,027,314	-		BBR_RS18950	0.61	+1.0
2,027,350	+		BBR_RS18950	0.65	+1.3
2,027,350	+		BBR_RS18950	0.65	-2.2
2,027,355	+		BBR_RS18950	0.66	-2.8
2,027,363	-		BBR_RS18950	0.67	-1.5
2,027,365	+		BBR_RS18950	0.67	+0.6
2,027,365	+		BBR_RS18950	0.67	-1.8
2,027,365	+		BBR_RS18950	0.67	+3.7
2,027,365	+		BBR_RS18950	0.67	-1.3
2,027,373	-		BBR_RS18950	0.68	-1.6
2,027,374	+		BBR_RS18950	0.68	-1.4
2,027,375	+		BBR_RS18950	0.68	-1.8
2,027,375	+		BBR_RS18950	0.68	+1.3
2,027,375	+		BBR_RS18950	0.68	-1.5
2,027,380	+		BBR_RS18950	0.69	-0.4
2,027,388	-		BBR_RS18950	0.70	-1.9
2,027,388	-		BBR_RS18950	0.70	+2.2
2,027,393	-		BBR_RS18950	0.70	-0.2
2,027,398	+		BBR_RS18950	0.71	-1.3
2,027,420	+		BBR_RS18950	0.73	+0.9
2,027,420	+		BBR_RS18950	0.73	-2.6
2,027,428	+		BBR_RS18950	0.74	+1.4
2,027,428	-		BBR_RS18950	0.74	+1.8
2,027,437	+		BBR_RS18950	0.75	+2.9
2,027,459	+		BBR_RS18950	0.78	-0.6
2,027,467	-		BBR_RS18950	0.78	-0.1
2,027,467	-		BBR_RS18950	0.78	+1.0
2,027,467	-		BBR_RS18950	0.78	-1.2
2,027,470	-		BBR_RS18950	0.79	-3.2
2,027,474	+		BBR_RS18950	0.79	-0.1
2,027,479	+		BBR_RS18950	0.80	-3.1
2,027,487	-		BBR_RS18950	0.81	-0.8
2,027,493	+		BBR_RS18950	0.81	+3.5
2,027,498	+		BBR_RS18950	0.82	+1.0
2,027,501	-		BBR_RS18950	0.82	-0.9
2,027,514	-		BBR_RS18950	0.84	+0.6
2,027,517	+		BBR_RS18950	0.84	-2.1
2,027,517	+		BBR_RS18950	0.84	-1.8
2,027,522	-		BBR_RS18950	0.85	+1.1
2,027,528	+		BBR_RS18950	0.85	+3.9
2,027,531	-		BBR_RS18950	0.86	+0.8
2,027,535	-		BBR_RS18950	0.86	-1.4
2,027,535	-		BBR_RS18950	0.86	+0.3
2,027,551	+		BBR_RS18950	0.88	+0.5
2,027,551	+		BBR_RS18950	0.88	+1.5
2,027,551	+		BBR_RS18950	0.88	-3.2
2,027,561	+		BBR_RS18950	0.89	-1.5
2,027,566	+		BBR_RS18950	0.90	-2.6
2,027,566	+		BBR_RS18950	0.90	-2.8
2,027,574	-				+3.5
2,027,574	-				+3.4
2,027,574	-				-0.9
2,027,574	-				+0.7
2,027,624	+				-1.7
2,027,662	-				+2.2
2,027,662	-				+3.2
2,027,665	+				+2.6
2,027,673	-				-0.7
2,027,677	-				+2.8
2,027,678	-				+0.9
2,027,684	-				-0.6
2,027,689	-				-2.3
2,027,689	-				+0.2
2,027,699	-				+1.8
2,027,701	-				+0.1
2,027,714	-				+1.0
2,027,714	-				-1.8
2,027,783	+				-0.4
2,027,783	+				-2.1
2,027,785	+				+0.3
2,027,806	+				+2.5
2,027,807	+				-0.6
2,027,807	+				+1.4
2,027,815	-				+0.1
2,027,815	-				+0.7
2,027,815	-				+1.5
2,027,853	+				+3.1
2,027,880	-				+0.2
2,027,880	-				+1.8
2,027,908	+				+2.8
2,027,926	+				+2.0
2,027,939	-				-1.7
2,027,941	-				+0.7
2,027,963	-				-2.5
2,027,967	+				+0.3
2,028,011	-				-1.3
2,028,037	-				-1.6
2,028,154	-				-0.7
2,028,164	-				-1.4
2,028,187	-				-2.6
2,028,192	-				-1.9
2,028,250	-		BBR_RS18955	0.11	-1.8
2,028,261	-		BBR_RS18955	0.11	-1.6
2,028,345	-		BBR_RS18955	0.14	-0.1
2,028,353	-		BBR_RS18955	0.15	-0.3
2,028,404	-		BBR_RS18955	0.17	-2.3
2,028,421	-		BBR_RS18955	0.17	-1.2
2,028,426	-		BBR_RS18955	0.17	-1.4
2,028,436	-		BBR_RS18955	0.18	-0.7
2,028,442	-		BBR_RS18955	0.18	-2.5
2,028,571	-		BBR_RS18955	0.23	-0.8
2,028,648	-		BBR_RS18955	0.26	-1.8
2,028,648	-		BBR_RS18955	0.26	-1.2
2,028,658	-		BBR_RS18955	0.26	-1.4
2,028,696	+		BBR_RS18955	0.27	+3.1
2,028,704	-		BBR_RS18955	0.28	-1.6
2,028,742	-		BBR_RS18955	0.29	-1.2
2,028,746	-		BBR_RS18955	0.29	-1.4
2,028,852	-		BBR_RS18955	0.33	-1.7
2,028,856	-		BBR_RS18955	0.33	-1.2
2,028,926	-		BBR_RS18955	0.36	-0.2
2,028,940	-		BBR_RS18955	0.36	+0.3
2,029,100	-		BBR_RS18955	0.42	-1.7
2,029,116	-		BBR_RS18955	0.43	-0.5
2,029,167	-		BBR_RS18955	0.45	-0.7
2,029,187	-		BBR_RS18955	0.45	-0.1
2,029,199	-		BBR_RS18955	0.46	-0.6
2,029,199	-		BBR_RS18955	0.46	-1.3
2,029,246	-		BBR_RS18955	0.47	-1.1
2,029,264	-		BBR_RS18955	0.48	-3.0
2,029,303	-		BBR_RS18955	0.50	-2.6
2,029,320	-		BBR_RS18955	0.50	+0.7
2,029,326	-		BBR_RS18955	0.50	-1.8
2,029,371	-		BBR_RS18955	0.52	+0.1
2,029,377	-		BBR_RS18955	0.52	-0.0
2,029,426	-		BBR_RS18955	0.54	+0.0
2,029,463	-		BBR_RS18955	0.55	-2.3
2,029,503	-		BBR_RS18955	0.57	-1.7
2,029,525	-		BBR_RS18955	0.58	-1.8
2,029,530	-		BBR_RS18955	0.58	-2.2
2,029,532	-		BBR_RS18955	0.58	-2.2
2,029,553	-		BBR_RS18955	0.59	-1.5
2,029,579	-		BBR_RS18955	0.60	-2.3
2,029,590	-		BBR_RS18955	0.60	-1.2
2,029,591	-		BBR_RS18955	0.60	-1.0
2,029,595	-		BBR_RS18955	0.60	-2.5
2,029,642	-		BBR_RS18955	0.62	-1.9
2,029,642	-		BBR_RS18955	0.62	+0.2
2,029,642	-		BBR_RS18955	0.62	-2.3
2,029,661	-		BBR_RS18955	0.63	-1.4
2,029,673	-		BBR_RS18955	0.63	-0.0
2,029,729	+		BBR_RS18955	0.65	-0.4
2,029,784	+		BBR_RS18955	0.67	-0.1
2,029,797	-		BBR_RS18955	0.68	-1.8
2,029,811	+		BBR_RS18955	0.68	+1.1
2,029,811	+		BBR_RS18955	0.68	-0.0
2,029,819	-		BBR_RS18955	0.68	-2.6
2,029,835	+		BBR_RS18955	0.69	+1.3
2,029,856	+		BBR_RS18955	0.70	+0.2
2,029,858	-		BBR_RS18955	0.70	-1.1
2,029,869	-		BBR_RS18955	0.70	-2.0
2,029,876	+		BBR_RS18955	0.71	-0.2
2,029,879	-		BBR_RS18955	0.71	-2.3
2,029,897	-		BBR_RS18955	0.71	-0.7
2,029,902	-		BBR_RS18955	0.72	-2.6
2,029,902	-		BBR_RS18955	0.72	-2.7
2,029,902	-		BBR_RS18955	0.72	-2.4
2,029,921	-		BBR_RS18955	0.72	-2.1
2,029,931	-		BBR_RS18955	0.73	-1.3
2,029,964	-		BBR_RS18955	0.74	-3.7
2,029,980	-		BBR_RS18955	0.74	-2.3
2,029,987	-		BBR_RS18955	0.75	-2.1
2,030,017	+		BBR_RS18955	0.76	+0.1
2,030,017	+		BBR_RS18955	0.76	+1.9
2,030,035	-		BBR_RS18955	0.76	+1.7
2,030,035	-		BBR_RS18955	0.76	-1.5
2,030,046	-		BBR_RS18955	0.77	-1.4
2,030,046	-		BBR_RS18955	0.77	-1.4
2,030,082	+		BBR_RS18955	0.78	-0.3
2,030,106	-		BBR_RS18955	0.79	-1.3
2,030,134	+		BBR_RS18955	0.80	-1.1
2,030,135	-		BBR_RS18955	0.80	-1.3
2,030,142	-		BBR_RS18955	0.80	-4.3
2,030,182	-		BBR_RS18955	0.82	-1.6
2,030,192	-		BBR_RS18955	0.82	-2.6
2,030,192	-		BBR_RS18955	0.82	-1.4
2,030,197	+		BBR_RS18955	0.82	-1.8
2,030,200	-		BBR_RS18955	0.82	-0.9
2,030,257	-		BBR_RS18955	0.85	-1.4
2,030,303	-		BBR_RS18955	0.86	-0.9
2,030,355	-		BBR_RS18955	0.88	-1.0
2,030,399	-		BBR_RS18955	0.90	-3.4
2,030,456	-				-1.3
2,030,482	-				-2.7
2,030,500	-				-1.5
2,030,505	-				-1.4
2,030,517	-				-2.0
2,030,545	-				-2.9
2,030,555	-				-1.5
2,030,573	+				-0.3
2,030,574	-				-2.3
2,030,581	-				-1.3
2,030,581	-				-1.4
2,030,595	-				-1.4
2,030,616	-				-1.0
2,030,623	-				-2.2
2,030,677	+				-1.4
2,030,690	+				-0.4
2,030,714	-				-2.2
2,030,718	+				-0.8
2,030,718	+				-1.1
2,030,720	+				-2.5
2,030,726	-				-2.4
2,030,726	-				-2.5
2,030,737	+				-1.6
2,030,755	-				-2.9
2,030,758	+				-1.5
2,030,759	+				-0.8
2,030,765	+				-2.3
2,030,765	+				-3.2
2,030,765	+				-2.4
2,030,767	-				-0.8
2,030,767	-				-1.5
2,030,797	-				-1.0
2,030,814	+				+0.0
2,030,822	-				-0.9
2,030,843	-				-2.1
2,031,001	+				+1.6
2,031,001	-				+3.1
2,031,194	-				-2.0
2,031,199	+				+0.5
2,031,199	+				-1.7
2,031,199	+				-0.1
2,031,253	-				+0.8
2,031,260	+				-0.9
2,031,260	+				-0.8
2,031,274	-				+4.3
2,031,303	+				-1.8
2,031,305	+				+1.7
2,031,309	+				+0.5
2,031,315	+				-2.1
2,031,315	+				-1.2
2,031,316	-				-2.6
2,031,317	-				+0.2
2,031,320	+				-2.7
2,031,322	-				+4.0
2,031,324	+		BBR_RS18960	0.10	+3.7
2,031,324	+		BBR_RS18960	0.10	+3.2
2,031,327	-		BBR_RS18960	0.10	+1.1
2,031,330	+		BBR_RS18960	0.11	-0.9
2,031,330	+		BBR_RS18960	0.11	+1.7
2,031,330	+		BBR_RS18960	0.11	+1.7
2,031,337	+		BBR_RS18960	0.11	-0.5
2,031,338	-		BBR_RS18960	0.11	+0.1
2,031,378	+		BBR_RS18960	0.15	+0.1
2,031,380	+		BBR_RS18960	0.15	+0.4
2,031,385	+		BBR_RS18960	0.16	+3.7
2,031,393	-		BBR_RS18960	0.16	+2.0
2,031,407	+		BBR_RS18960	0.17	-0.4
2,031,407	+		BBR_RS18960	0.17	-1.1
2,031,415	-		BBR_RS18960	0.18	+1.4
2,031,415	-		BBR_RS18960	0.18	-0.9
2,031,421	+		BBR_RS18960	0.19	-1.1
2,031,421	+		BBR_RS18960	0.19	-0.8
2,031,421	+		BBR_RS18960	0.19	+2.2
2,031,426	+		BBR_RS18960	0.19	+0.6
2,031,429	-		BBR_RS18960	0.19	+1.1
2,031,429	-		BBR_RS18960	0.19	-1.4
2,031,434	-		BBR_RS18960	0.20	+0.7
2,031,444	+		BBR_RS18960	0.21	+4.3
2,031,446	-		BBR_RS18960	0.21	-2.3
2,031,454	+		BBR_RS18960	0.22	+0.2
2,031,465	-		BBR_RS18960	0.23	+0.9
2,031,473	-		BBR_RS18960	0.23	-1.4
2,031,489	-		BBR_RS18960	0.25	-0.8
2,031,504	-		BBR_RS18960	0.26	+0.4
2,031,504	-		BBR_RS18960	0.26	+1.6
2,031,520	+		BBR_RS18960	0.27	-1.7
2,031,527	+		BBR_RS18960	0.28	+0.0
2,031,532	+		BBR_RS18960	0.28	+0.5
2,031,532	+		BBR_RS18960	0.28	-1.4
2,031,540	-		BBR_RS18960	0.29	-0.1
2,031,544	+		BBR_RS18960	0.30	+2.2
2,031,550	+		BBR_RS18960	0.30	-0.1
2,031,558	-		BBR_RS18960	0.31	+1.4
2,031,560	-		BBR_RS18960	0.31	+1.9
2,031,613	-		BBR_RS18960	0.36	-0.2
2,031,641	+		BBR_RS18960	0.38	-0.7
2,031,641	+		BBR_RS18960	0.38	+0.6
2,031,657	+		BBR_RS18960	0.40	+0.0
2,031,659	+		BBR_RS18960	0.40	-1.9
2,031,661	-		BBR_RS18960	0.40	-0.0
2,031,663	-		BBR_RS18960	0.40	+2.3