Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18200

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
1,868,388	+		BBR_RS18195	0.36	-0.4
1,868,396	-		BBR_RS18195	0.36	-0.7
1,868,396	-		BBR_RS18195	0.36	-1.1
1,868,411	-		BBR_RS18195	0.37	+2.3
1,868,440	+		BBR_RS18195	0.39	+0.3
1,868,493	+		BBR_RS18195	0.43	+1.0
1,868,494	-		BBR_RS18195	0.43	+0.4
1,868,494	-		BBR_RS18195	0.43	-1.2
1,868,496	-		BBR_RS18195	0.43	-0.3
1,868,496	-		BBR_RS18195	0.43	-0.8
1,868,499	-		BBR_RS18195	0.43	+0.8
1,868,517	-		BBR_RS18195	0.44	-1.3
1,868,517	-		BBR_RS18195	0.44	-3.2
1,868,540	-		BBR_RS18195	0.46	+0.3
1,868,543	-		BBR_RS18195	0.46	-1.3
1,868,593	-		BBR_RS18195	0.49	-2.5
1,868,642	-		BBR_RS18195	0.53	-0.6
1,868,646	-		BBR_RS18195	0.53	-1.4
1,868,661	-		BBR_RS18195	0.54	-2.3
1,868,714	-		BBR_RS18195	0.57	+0.4
1,868,718	-		BBR_RS18195	0.58	-2.6
1,868,739	+		BBR_RS18195	0.59	-1.2
1,868,739	+		BBR_RS18195	0.59	-1.4
1,868,740	-		BBR_RS18195	0.59	-0.6
1,868,747	-		BBR_RS18195	0.60	-1.5
1,868,753	-		BBR_RS18195	0.60	-0.7
1,868,757	+		BBR_RS18195	0.60	-0.3
1,868,757	-		BBR_RS18195	0.60	-1.5
1,868,765	-		BBR_RS18195	0.61	-0.2
1,868,818	-		BBR_RS18195	0.64	-1.6
1,868,818	-		BBR_RS18195	0.64	-0.5
1,868,860	-		BBR_RS18195	0.67	-0.1
1,868,903	+		BBR_RS18195	0.70	+0.8
1,868,903	+		BBR_RS18195	0.70	-0.9
1,868,906	-		BBR_RS18195	0.70	-2.0
1,868,911	-		BBR_RS18195	0.70	-1.4
1,868,937	-		BBR_RS18195	0.72	-2.1
1,868,938	+		BBR_RS18195	0.72	-0.7
1,868,973	+		BBR_RS18195	0.75	-1.5
1,869,004	-		BBR_RS18195	0.77	+0.1
1,869,014	-		BBR_RS18195	0.77	-2.9
1,869,033	-		BBR_RS18195	0.79	-1.8
1,869,059	+		BBR_RS18195	0.80	-2.2
1,869,059	+		BBR_RS18195	0.80	+2.3
1,869,183	-		BBR_RS18195	0.89	-0.8
1,869,183	-		BBR_RS18195	0.89	-1.6
1,869,183	-		BBR_RS18195	0.89	-1.9
1,869,190	-		BBR_RS18195	0.89	-1.7
1,869,193	-		BBR_RS18195	0.89	+3.3
1,869,204	-				-2.3
1,869,214	-				-2.8
1,869,214	-				+0.4
1,869,216	+				-1.1
1,869,228	+				-2.6
1,869,236	-				+1.3
1,869,251	-				+2.6
1,869,270	-				-0.3
1,869,276	-				-1.6
1,869,276	-				-1.0
1,869,312	+				-1.9
1,869,367	-				-1.5
1,869,367	-				+1.8
1,869,380	+				+1.5
1,869,380	+				-1.3
1,869,442	+				+0.4
1,869,442	+				+2.2
1,869,454	+				-1.0
1,869,462	-				-1.6
1,869,564	+		BBR_RS18200	0.11	+2.0
1,869,572	-		BBR_RS18200	0.12	+0.4
1,869,603	-		BBR_RS18200	0.14	-0.5
1,869,610	+		BBR_RS18200	0.14	+1.6
1,869,617	+		BBR_RS18200	0.14	-1.0
1,869,625	-		BBR_RS18200	0.15	+0.2
1,869,635	+		BBR_RS18200	0.15	+1.4
1,869,643	-		BBR_RS18200	0.16	-0.3
1,869,653	+		BBR_RS18200	0.17	+2.3
1,869,675	+		BBR_RS18200	0.18	-0.5
1,869,675	+		BBR_RS18200	0.18	+2.7
1,869,675	+		BBR_RS18200	0.18	+1.2
1,869,675	+		BBR_RS18200	0.18	+1.6
1,869,680	+		BBR_RS18200	0.18	+1.7
1,869,683	-		BBR_RS18200	0.18	+1.1
1,869,688	-		BBR_RS18200	0.19	+0.4
1,869,709	+		BBR_RS18200	0.20	-0.4
1,869,717	-		BBR_RS18200	0.20	-2.2
1,869,717	-		BBR_RS18200	0.20	-2.3
1,869,717	-		BBR_RS18200	0.20	-2.0
1,869,727	-		BBR_RS18200	0.21	-2.1
1,869,731	+		BBR_RS18200	0.21	-0.0
1,869,731	+		BBR_RS18200	0.21	+0.6
1,869,738	-		BBR_RS18200	0.22	-1.2
1,869,739	-		BBR_RS18200	0.22	+1.3
1,869,760	-		BBR_RS18200	0.23	+0.4
1,869,830	+		BBR_RS18200	0.27	+0.8
1,869,834	-		BBR_RS18200	0.27	-1.2
1,869,838	-		BBR_RS18200	0.28	-0.5
1,869,850	+		BBR_RS18200	0.28	+1.2
1,869,912	-		BBR_RS18200	0.32	-0.8
1,869,912	-		BBR_RS18200	0.32	-0.8
1,869,917	-		BBR_RS18200	0.32	+1.4
1,869,939	+		BBR_RS18200	0.34	-0.3
1,870,012	+		BBR_RS18200	0.38	-1.0
1,870,012	+		BBR_RS18200	0.38	-0.7
1,870,020	-		BBR_RS18200	0.38	-1.9
1,870,020	-		BBR_RS18200	0.38	+0.5
1,870,071	+		BBR_RS18200	0.42	+4.0
1,870,079	-		BBR_RS18200	0.42	-2.8
1,870,156	-		BBR_RS18200	0.47	+0.0
1,870,182	-		BBR_RS18200	0.48	+1.5
1,870,182	-		BBR_RS18200	0.48	+0.6
1,870,184	-		BBR_RS18200	0.48	+1.0
1,870,203	-		BBR_RS18200	0.49	-3.5
1,870,203	-		BBR_RS18200	0.49	-2.4
1,870,207	+		BBR_RS18200	0.50	+0.4
1,870,226	+		BBR_RS18200	0.51	-0.3
1,870,235	-		BBR_RS18200	0.51	-1.1
1,870,244	+		BBR_RS18200	0.52	+1.2
1,870,244	+		BBR_RS18200	0.52	-0.1
1,870,259	-		BBR_RS18200	0.53	-0.3
1,870,270	-		BBR_RS18200	0.53	+1.4
1,870,317	-		BBR_RS18200	0.56	-0.3
1,870,317	-		BBR_RS18200	0.56	-0.3
1,870,333	-		BBR_RS18200	0.57	+2.7
1,870,346	+		BBR_RS18200	0.58	+0.3
1,870,376	-		BBR_RS18200	0.60	+1.4
1,870,395	-		BBR_RS18200	0.61	-2.3
1,870,395	-		BBR_RS18200	0.61	+0.2
1,870,410	+		BBR_RS18200	0.62	-2.2
1,870,420	+		BBR_RS18200	0.62	-1.7
1,870,562	-		BBR_RS18200	0.71	-0.1
1,870,581	+		BBR_RS18200	0.72	-1.2
1,870,599	-		BBR_RS18200	0.73	+0.9
1,870,606	-		BBR_RS18200	0.74	-0.7
1,870,616	-		BBR_RS18200	0.74	+3.6
1,870,622	-		BBR_RS18200	0.75	+0.5
1,870,637	+		BBR_RS18200	0.75	+2.6
1,870,637	+		BBR_RS18200	0.75	+1.2
1,870,645	-		BBR_RS18200	0.76	-0.6
1,870,670	+		BBR_RS18200	0.77	-1.2
1,870,705	+		BBR_RS18200	0.79	-0.2
1,870,710	+		BBR_RS18200	0.80	+1.3
1,870,712	+		BBR_RS18200	0.80	-0.3
1,870,712	+		BBR_RS18200	0.80	+0.5
1,870,713	-		BBR_RS18200	0.80	-0.7
1,870,713	-		BBR_RS18200	0.80	+0.2
1,870,713	-		BBR_RS18200	0.80	-2.1
1,870,718	-		BBR_RS18200	0.80	-0.7
1,870,735	+		BBR_RS18200	0.81	+3.3
1,870,735	+		BBR_RS18200	0.81	+2.3
1,870,743	-		BBR_RS18200	0.82	+1.2
1,870,760	+		BBR_RS18200	0.83	+0.4
1,870,771	+		BBR_RS18200	0.83	+2.2
1,870,787	-		BBR_RS18200	0.84	+3.2
1,870,805	+		BBR_RS18200	0.85	+2.1
1,870,823	-		BBR_RS18200	0.87	+2.8
1,870,858	-		BBR_RS18200	0.89	-1.3
1,870,886	-				-1.1
1,870,911	+				+2.1
1,870,918	-				-1.0
1,870,920	-				-0.7
1,870,963	+				+0.1
1,870,983	+				-0.5
1,870,988	+				-1.2
1,870,996	+				+4.5
1,870,996	+				+3.1
1,871,004	-				-2.6
1,871,021	-				-1.4
1,871,050	-				-2.0
1,871,050	-				+1.5
1,871,069	-				+0.4
1,871,071	+				-0.4
1,871,078	-				-1.8
1,871,098	+				+3.3
1,871,116	+				+0.5
1,871,116	+				+1.8
1,871,125	+				+0.3
1,871,133	-				-1.4
1,871,133	-				+0.4
1,871,133	-				-1.4
1,871,144	+				+1.4
1,871,152	-				-1.1
1,871,157	-		BBR_RS18205	0.10	-1.0
1,871,160	+		BBR_RS18205	0.10	-1.2
1,871,229	+		BBR_RS18205	0.17	-2.2
1,871,231	+		BBR_RS18205	0.17	-2.7
1,871,269	-		BBR_RS18205	0.20	-0.4
1,871,269	-		BBR_RS18205	0.20	-1.7
1,871,269	-		BBR_RS18205	0.20	+2.8
1,871,293	-		BBR_RS18205	0.23	-0.2
1,871,328	-		BBR_RS18205	0.26	+0.6
1,871,345	+		BBR_RS18205	0.28	+2.2
1,871,429	-		BBR_RS18205	0.35	+1.7
1,871,440	+		BBR_RS18205	0.36	+2.1
1,871,483	+		BBR_RS18205	0.40	+0.8
1,871,491	-		BBR_RS18205	0.41	-1.8
1,871,516	+		BBR_RS18205	0.43	-1.3
1,871,562	-		BBR_RS18205	0.48	+1.5
1,871,612	+		BBR_RS18205	0.52	-1.6
1,871,612	+		BBR_RS18205	0.52	-1.8
1,871,613	+		BBR_RS18205	0.52	+2.4
1,871,613	+		BBR_RS18205	0.52	-0.6
1,871,620	-		BBR_RS18205	0.53	+2.0
1,871,645	+		BBR_RS18205	0.55	-1.2
1,871,679	+		BBR_RS18205	0.58	-1.7
1,871,687	-		BBR_RS18205	0.59	-0.7
1,871,687	-		BBR_RS18205	0.59	-1.7
1,871,808	+		BBR_RS18205	0.70	-0.8
1,871,823	-		BBR_RS18205	0.72	-0.6
1,871,851	-		BBR_RS18205	0.74	-1.3
1,871,856	-		BBR_RS18205	0.75	-2.3
1,871,874	-		BBR_RS18205	0.76	-2.0
1,871,893	+		BBR_RS18205	0.78	-0.6
1,871,901	-		BBR_RS18205	0.79	-2.1
1,871,932	+		BBR_RS18205	0.82	-1.5
1,871,945	-		BBR_RS18205	0.83	-0.1
1,871,989	+		BBR_RS18205	0.87	+0.3
1,872,047	-				+0.7