Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17890

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
1,792,791	-		BBR_RS17880	0.29	-0.7
1,792,879	+		BBR_RS17880	0.51	+4.0
1,792,923	+		BBR_RS17880	0.62	+1.4
1,792,932	+		BBR_RS17880	0.64	+2.3
1,793,434	-		BBR_RS21030	0.10	+3.2
1,793,445	-		BBR_RS21030	0.13	+2.7
1,793,560	+		BBR_RS21030	0.45	-1.8
1,793,560	+		BBR_RS21030	0.45	+0.6
1,793,563	-		BBR_RS21030	0.46	-0.0
1,793,568	-		BBR_RS21030	0.47	+0.2
1,793,591	+		BBR_RS21030	0.53	+0.6
1,793,591	+		BBR_RS21030	0.53	-0.9
1,793,613	-		BBR_RS21030	0.59	-0.8
1,793,613	-		BBR_RS21030	0.59	+1.3
1,793,674	-		BBR_RS21030	0.76	-1.6
1,793,757	+				+2.4
1,793,833	-				+0.1
1,793,847	+				-1.3
1,793,902	+				-0.8
1,793,902	+				-2.8
1,793,925	-				-1.6
1,793,930	+				-0.3
1,793,987	+				-1.6
1,794,003	-				-1.7
1,794,017	+				-1.4
1,794,022	+		BBR_RS17890	0.10	-2.4
1,794,025	-		BBR_RS17890	0.10	-2.0
1,794,025	-		BBR_RS17890	0.10	-0.0
1,794,030	-		BBR_RS17890	0.10	-0.9
1,794,055	+		BBR_RS17890	0.11	-0.7
1,794,166	+		BBR_RS17890	0.16	+0.3
1,794,166	+		BBR_RS17890	0.16	-1.2
1,794,171	+		BBR_RS17890	0.16	-1.5
1,794,174	-		BBR_RS17890	0.16	-0.2
1,794,174	-		BBR_RS17890	0.16	-0.2
1,794,174	-		BBR_RS17890	0.16	-0.0
1,794,207	+		BBR_RS17890	0.18	-2.1
1,794,215	-		BBR_RS17890	0.18	-2.6
1,794,238	+		BBR_RS17890	0.19	-1.6
1,794,241	-		BBR_RS17890	0.19	-0.1
1,794,243	+		BBR_RS17890	0.19	-0.7
1,794,255	-		BBR_RS17890	0.20	-2.5
1,794,264	+		BBR_RS17890	0.20	+1.4
1,794,310	+		BBR_RS17890	0.22	-1.9
1,794,311	+		BBR_RS17890	0.22	-1.8
1,794,313	-		BBR_RS17890	0.22	-1.6
1,794,318	-		BBR_RS17890	0.23	-2.4
1,794,340	-		BBR_RS17890	0.23	-1.6
1,794,349	+		BBR_RS17890	0.24	-0.9
1,794,354	+		BBR_RS17890	0.24	-0.9
1,794,383	-		BBR_RS17890	0.25	-0.3
1,794,430	-		BBR_RS17890	0.27	-2.5
1,794,431	-		BBR_RS17890	0.27	-3.0
1,794,435	-		BBR_RS17890	0.27	-2.6
1,794,467	+		BBR_RS17890	0.29	+0.5
1,794,472	+		BBR_RS17890	0.29	-1.0
1,794,472	+		BBR_RS17890	0.29	+0.5
1,794,479	+		BBR_RS17890	0.29	-2.5
1,794,479	+		BBR_RS17890	0.29	-2.4
1,794,480	-		BBR_RS17890	0.29	+0.0
1,794,480	-		BBR_RS17890	0.29	-1.6
1,794,490	-		BBR_RS17890	0.30	-2.7
1,794,490	-		BBR_RS17890	0.30	-2.9
1,794,545	+		BBR_RS17890	0.32	-1.5
1,794,555	+		BBR_RS17890	0.33	-2.1
1,794,563	-		BBR_RS17890	0.33	-2.9
1,794,589	+		BBR_RS17890	0.34	-2.6
1,794,663	+		BBR_RS17890	0.37	-2.6
1,794,663	+		BBR_RS17890	0.37	-0.0
1,794,666	-		BBR_RS17890	0.37	-2.3
1,794,711	-		BBR_RS17890	0.39	-2.4
1,794,716	+		BBR_RS17890	0.39	-2.3
1,794,721	+		BBR_RS17890	0.40	-1.7
1,794,734	-		BBR_RS17890	0.40	-0.9
1,794,756	+		BBR_RS17890	0.41	-0.8
1,794,756	-		BBR_RS17890	0.41	-2.0
1,794,789	+		BBR_RS17890	0.42	+0.4
1,794,808	-		BBR_RS17890	0.43	-3.8
1,794,813	-		BBR_RS17890	0.43	-1.8
1,794,813	-		BBR_RS17890	0.43	-1.7
1,794,868	-		BBR_RS17890	0.46	+0.1
1,794,887	-		BBR_RS17890	0.47	-0.3
1,794,901	+		BBR_RS17890	0.47	-0.9
1,794,908	-		BBR_RS17890	0.48	-3.1
1,794,924	+		BBR_RS17890	0.48	-1.2
1,794,948	-		BBR_RS17890	0.49	-1.9
1,794,971	+		BBR_RS17890	0.50	-0.9
1,794,971	+		BBR_RS17890	0.50	-0.4
1,794,977	+		BBR_RS17890	0.50	-2.2
1,794,990	-		BBR_RS17890	0.51	-0.7
1,794,992	-		BBR_RS17890	0.51	+0.1
1,794,992	-		BBR_RS17890	0.51	-0.0
1,795,019	-		BBR_RS17890	0.52	-2.7
1,795,052	+		BBR_RS17890	0.54	-1.5
1,795,052	+		BBR_RS17890	0.54	-2.6
1,795,052	+		BBR_RS17890	0.54	-1.6
1,795,052	+		BBR_RS17890	0.54	-0.6
1,795,060	-		BBR_RS17890	0.54	-0.9
1,795,060	-		BBR_RS17890	0.54	-2.0
1,795,060	-		BBR_RS17890	0.54	-2.1
1,795,060	-		BBR_RS17890	0.54	-0.4
1,795,060	-		BBR_RS17890	0.54	-1.4
1,795,188	-		BBR_RS17890	0.59	+0.1
1,795,216	-		BBR_RS17890	0.61	+0.4
1,795,241	-		BBR_RS17890	0.62	+0.4
1,795,260	-		BBR_RS17890	0.62	+0.0
1,795,265	+		BBR_RS17890	0.63	-2.9
1,795,281	+		BBR_RS17890	0.63	+1.1
1,795,333	-		BBR_RS17890	0.65	-2.3
1,795,350	+		BBR_RS17890	0.66	-2.3
1,795,351	-		BBR_RS17890	0.66	-2.4
1,795,351	-		BBR_RS17890	0.66	-2.0
1,795,358	+		BBR_RS17890	0.67	-1.3
1,795,399	-		BBR_RS17890	0.68	-0.9
1,795,433	+		BBR_RS17890	0.70	-2.8
1,795,489	-		BBR_RS17890	0.72	-2.1
1,795,555	+		BBR_RS17890	0.75	-3.1
1,795,555	+		BBR_RS17890	0.75	-0.9
1,795,555	+		BBR_RS17890	0.75	-2.4
1,795,555	+		BBR_RS17890	0.75	-1.3
1,795,563	-		BBR_RS17890	0.75	-2.6
1,795,568	-		BBR_RS17890	0.75	-1.3
1,795,589	+		BBR_RS17890	0.76	-1.6
1,795,604	+		BBR_RS17890	0.77	-2.2
1,795,608	-		BBR_RS17890	0.77	-2.2
1,795,609	+		BBR_RS17890	0.77	-0.9
1,795,609	+		BBR_RS17890	0.77	-2.4
1,795,610	+		BBR_RS17890	0.77	-0.4
1,795,618	-		BBR_RS17890	0.78	+0.1
1,795,618	-		BBR_RS17890	0.78	-1.6
1,795,618	-		BBR_RS17890	0.78	-3.0
1,795,618	-		BBR_RS17890	0.78	-1.2
1,795,618	-		BBR_RS17890	0.78	-1.2
1,795,702	+		BBR_RS17890	0.81	-1.5
1,795,707	+		BBR_RS17890	0.81	-2.2
1,795,713	-		BBR_RS17890	0.82	-0.8
1,795,725	+		BBR_RS17890	0.82	-1.9
1,795,725	+		BBR_RS17890	0.82	-2.9
1,795,726	+		BBR_RS17890	0.82	-0.8
1,795,736	+		BBR_RS17890	0.83	-1.4
1,795,736	+		BBR_RS17890	0.83	-1.4
1,795,744	-		BBR_RS17890	0.83	-0.7
1,795,747	-		BBR_RS17890	0.83	-1.5
1,795,747	-		BBR_RS17890	0.83	-1.2
1,795,747	-		BBR_RS17890	0.83	-0.4
1,795,747	-		BBR_RS17890	0.83	-1.9
1,795,772	+		BBR_RS17890	0.84	-2.4
1,795,772	+		BBR_RS17890	0.84	-0.9
1,795,780	-		BBR_RS17890	0.84	-0.5
1,795,780	-		BBR_RS17890	0.84	-2.0
1,795,788	+		BBR_RS17890	0.85	-0.5
1,795,795	+		BBR_RS17890	0.85	-0.8
1,795,824	+		BBR_RS17890	0.86	+0.2
1,795,839	+		BBR_RS17890	0.87	-0.9
1,795,868	+		BBR_RS17890	0.88	+1.0
1,795,945	+				-1.8
1,796,014	-				-3.2
1,796,015	-				-0.4
1,796,043	+				+0.5
1,796,078	+				-0.8
1,796,118	-				-1.8
1,796,118	-				-2.0
1,796,118	-				-1.0
1,796,129	+				-0.2
1,796,129	+				-0.6
1,796,143	-				+0.4
1,796,151	-				-0.7
1,796,217	+				-2.9
1,796,217	+				+1.6
1,796,217	+				-1.6
1,796,235	-				+0.8
1,796,235	-				+1.1
1,796,325	+				-1.2
1,796,333	-				-0.8
1,796,333	-				+0.5
1,796,360	-				-0.2
1,796,394	-				-0.3
1,796,440	+		BBR_RS17895	0.13	+0.6
1,796,450	-		BBR_RS17895	0.14	+3.6
1,796,461	+		BBR_RS17895	0.16	+0.3
1,796,483	+		BBR_RS17895	0.19	-0.3
1,796,483	+		BBR_RS17895	0.19	+1.3
1,796,483	+		BBR_RS17895	0.19	+0.6
1,796,493	+		BBR_RS17895	0.20	+1.3
1,796,493	+		BBR_RS17895	0.20	+0.6
1,796,501	-		BBR_RS17895	0.21	-2.0
1,796,501	-		BBR_RS17895	0.21	+1.8
1,796,555	-		BBR_RS17895	0.29	+3.6
1,796,597	+		BBR_RS17895	0.35	-1.5
1,796,629	-		BBR_RS17895	0.39	+2.3
1,796,639	+		BBR_RS17895	0.40	+1.0
1,796,639	+		BBR_RS17895	0.40	+1.2
1,796,639	+		BBR_RS17895	0.40	-0.7
1,796,639	+		BBR_RS17895	0.40	-1.1
1,796,639	+		BBR_RS17895	0.40	+0.1
1,796,647	-		BBR_RS17895	0.41	+1.2
1,796,664	+		BBR_RS17895	0.44	+1.6
1,796,666	+		BBR_RS17895	0.44	-0.5
1,796,682	-		BBR_RS17895	0.46	-2.0
1,796,700	+		BBR_RS17895	0.49	-1.0
1,796,719	-		BBR_RS17895	0.51	-0.4
1,796,719	-		BBR_RS17895	0.51	-0.3
1,796,719	-		BBR_RS17895	0.51	+1.3
1,796,729	-		BBR_RS17895	0.53	+0.9
1,796,729	-		BBR_RS17895	0.53	+2.1
1,796,737	+		BBR_RS17895	0.54	+3.2
1,796,747	-		BBR_RS17895	0.55	+1.5
1,796,843	-		BBR_RS17895	0.68	-0.4
1,796,849	+		BBR_RS17895	0.69	-1.5
1,796,849	+		BBR_RS17895	0.69	-0.3
1,796,849	+		BBR_RS17895	0.69	+1.0
1,796,857	-		BBR_RS17895	0.70	+3.2
1,796,857	-		BBR_RS17895	0.70	-0.9
1,796,872	-		BBR_RS17895	0.72	-0.5
1,796,884	+		BBR_RS17895	0.74	+0.1
1,796,951	+		BBR_RS17895	0.83	+3.5
1,796,959	-		BBR_RS17895	0.84	-1.4
1,796,959	-		BBR_RS17895	0.84	+2.9
1,797,006	+				+2.4
1,797,014	-				-0.2
1,797,021	-				+2.2
1,797,035	-				+1.3
1,797,084	+				+3.6
1,797,109	+				-0.9
1,797,117	-				+0.5
1,797,134	-				-1.3