Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS16515 and BBR_RS16520 are separated by 162 nucleotides BBR_RS16520 and BBR_RS16525 are separated by 722 nucleotides
BBR_RS16515: BBR_RS16515 - preprotein translocase subunit SecA, at 1,470,621 to 1,473,503
_RS16515
BBR_RS16520: BBR_RS16520 - ribosome-associated translation inhibitor RaiA, at 1,473,666 to 1,474,328
_RS16520
BBR_RS16525: BBR_RS16525 - RecX family transcriptional regulator, at 1,475,051 to 1,475,650
_RS16525
Position (kb) 1473
1474
1475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1473.513 kb on - strand at 1473.552 kb on - strand at 1473.554 kb on + strand at 1473.721 kb on - strand at 1473.722 kb on - strand at 1473.783 kb on + strand, within BBR_RS16520 at 1473.789 kb on + strand, within BBR_RS16520 at 1473.835 kb on + strand, within BBR_RS16520 at 1473.836 kb on - strand, within BBR_RS16520 at 1473.884 kb on - strand, within BBR_RS16520 at 1473.890 kb on - strand, within BBR_RS16520 at 1473.908 kb on + strand, within BBR_RS16520 at 1473.942 kb on - strand, within BBR_RS16520 at 1473.972 kb on - strand, within BBR_RS16520 at 1474.004 kb on - strand, within BBR_RS16520 at 1474.048 kb on - strand, within BBR_RS16520 at 1474.086 kb on + strand, within BBR_RS16520 at 1474.086 kb on + strand, within BBR_RS16520 at 1474.089 kb on - strand, within BBR_RS16520 at 1474.096 kb on - strand, within BBR_RS16520 at 1474.096 kb on - strand, within BBR_RS16520 at 1474.096 kb on - strand, within BBR_RS16520 at 1474.106 kb on - strand, within BBR_RS16520 at 1474.106 kb on - strand, within BBR_RS16520 at 1474.111 kb on - strand, within BBR_RS16520 at 1474.118 kb on + strand, within BBR_RS16520 at 1474.123 kb on + strand, within BBR_RS16520 at 1474.127 kb on + strand, within BBR_RS16520 at 1474.131 kb on - strand, within BBR_RS16520 at 1474.158 kb on - strand, within BBR_RS16520 at 1474.158 kb on - strand, within BBR_RS16520 at 1474.182 kb on - strand, within BBR_RS16520 at 1474.234 kb on - strand, within BBR_RS16520 at 1474.252 kb on + strand, within BBR_RS16520 at 1474.405 kb on - strand at 1474.405 kb on - strand at 1474.475 kb on + strand at 1474.506 kb on + strand at 1474.577 kb on + strand at 1475.023 kb on + strand at 1475.093 kb on + strand at 1475.121 kb on - strand, within BBR_RS16525 at 1475.221 kb on - strand, within BBR_RS16525 at 1475.229 kb on + strand, within BBR_RS16525 at 1475.234 kb on + strand, within BBR_RS16525 at 1475.237 kb on - strand, within BBR_RS16525 at 1475.242 kb on - strand, within BBR_RS16525 at 1475.287 kb on - strand, within BBR_RS16525 at 1475.318 kb on + strand, within BBR_RS16525 at 1475.318 kb on + strand, within BBR_RS16525 at 1475.318 kb on + strand, within BBR_RS16525
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 1,473,513 - -0.6 1,473,552 - -1.2 1,473,554 + -1.4 1,473,721 - -0.6 1,473,722 - +0.0 1,473,783 + BBR_RS16520 0.18 +0.4 1,473,789 + BBR_RS16520 0.19 +1.0 1,473,835 + BBR_RS16520 0.25 -1.1 1,473,836 - BBR_RS16520 0.26 -1.6 1,473,884 - BBR_RS16520 0.33 -1.9 1,473,890 - BBR_RS16520 0.34 -3.1 1,473,908 + BBR_RS16520 0.37 -1.1 1,473,942 - BBR_RS16520 0.42 -1.4 1,473,972 - BBR_RS16520 0.46 -1.2 1,474,004 - BBR_RS16520 0.51 -2.1 1,474,048 - BBR_RS16520 0.58 -2.7 1,474,086 + BBR_RS16520 0.63 -0.3 1,474,086 + BBR_RS16520 0.63 -0.4 1,474,089 - BBR_RS16520 0.64 -1.2 1,474,096 - BBR_RS16520 0.65 -0.6 1,474,096 - BBR_RS16520 0.65 -1.9 1,474,096 - BBR_RS16520 0.65 -0.7 1,474,106 - BBR_RS16520 0.66 -2.9 1,474,106 - BBR_RS16520 0.66 -2.1 1,474,111 - BBR_RS16520 0.67 -1.9 1,474,118 + BBR_RS16520 0.68 -0.7 1,474,123 + BBR_RS16520 0.69 -0.5 1,474,127 + BBR_RS16520 0.70 -1.4 1,474,131 - BBR_RS16520 0.70 -2.3 1,474,158 - BBR_RS16520 0.74 -1.2 1,474,158 - BBR_RS16520 0.74 -1.8 1,474,182 - BBR_RS16520 0.78 +1.8 1,474,234 - BBR_RS16520 0.86 -1.2 1,474,252 + BBR_RS16520 0.88 -1.4 1,474,405 - -1.4 1,474,405 - -0.2 1,474,475 + -0.5 1,474,506 + +1.8 1,474,577 + +1.4 1,475,023 + -3.5 1,475,093 + +3.3 1,475,121 - BBR_RS16525 0.12 +0.3 1,475,221 - BBR_RS16525 0.28 -2.3 1,475,229 + BBR_RS16525 0.30 -0.7 1,475,234 + BBR_RS16525 0.30 +1.8 1,475,237 - BBR_RS16525 0.31 +1.5 1,475,242 - BBR_RS16525 0.32 +2.2 1,475,287 - BBR_RS16525 0.39 -1.4 1,475,318 + BBR_RS16525 0.45 +0.4 1,475,318 + BBR_RS16525 0.45 +1.7 1,475,318 + BBR_RS16525 0.45 -0.3
Or see this region's nucleotide sequence