Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13890

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13885 and BBR_RS13890 overlap by 4 nucleotidesBBR_RS13890 and BBR_RS13895 are separated by 228 nucleotides BBR_RS13885: BBR_RS13885 - N-acetyl-gamma-glutamyl-phosphate reductase, at 894,905 to 895,999 _RS13885 BBR_RS13890: BBR_RS13890 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 895,996 to 897,171 _RS13890 BBR_RS13895: BBR_RS13895 - acetylglutamate kinase, at 897,400 to 898,356 _RS13895 Position (kb) 895 896 897 898Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 894.999 kb on + strandat 895.087 kb on + strand, within BBR_RS13885at 895.087 kb on + strand, within BBR_RS13885at 895.092 kb on + strand, within BBR_RS13885at 895.095 kb on - strand, within BBR_RS13885at 895.095 kb on - strand, within BBR_RS13885at 895.156 kb on + strand, within BBR_RS13885at 895.193 kb on + strand, within BBR_RS13885at 895.281 kb on + strand, within BBR_RS13885at 895.283 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.344 kb on - strand, within BBR_RS13885at 895.371 kb on + strand, within BBR_RS13885at 895.383 kb on + strand, within BBR_RS13885at 895.386 kb on + strand, within BBR_RS13885at 895.415 kb on + strand, within BBR_RS13885at 895.421 kb on + strand, within BBR_RS13885at 895.429 kb on - strand, within BBR_RS13885at 895.465 kb on - strand, within BBR_RS13885at 895.468 kb on + strand, within BBR_RS13885at 895.542 kb on - strand, within BBR_RS13885at 895.542 kb on - strand, within BBR_RS13885at 895.600 kb on + strand, within BBR_RS13885at 895.627 kb on + strand, within BBR_RS13885at 895.663 kb on + strand, within BBR_RS13885at 895.663 kb on + strand, within BBR_RS13885at 895.681 kb on - strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.716 kb on - strand, within BBR_RS13885at 895.716 kb on - strand, within BBR_RS13885at 895.723 kb on + strand, within BBR_RS13885at 895.763 kb on + strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.794 kb on - strand, within BBR_RS13885at 895.806 kb on + strand, within BBR_RS13885at 895.848 kb on - strand, within BBR_RS13885at 895.894 kb on + strandat 895.914 kb on - strandat 895.949 kb on - strandat 895.973 kb on - strandat 895.983 kb on - strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.988 kb on + strandat 895.988 kb on + strandat 895.989 kb on - strandat 895.989 kb on - strandat 896.062 kb on + strandat 896.094 kb on - strandat 896.112 kb on + strandat 896.141 kb on + strand, within BBR_RS13890at 896.141 kb on + strand, within BBR_RS13890at 896.144 kb on - strand, within BBR_RS13890at 896.149 kb on + strand, within BBR_RS13890at 896.149 kb on + strand, within BBR_RS13890at 896.152 kb on + strand, within BBR_RS13890at 896.163 kb on + strand, within BBR_RS13890at 896.170 kb on + strand, within BBR_RS13890at 896.223 kb on + strand, within BBR_RS13890at 896.231 kb on + strand, within BBR_RS13890at 896.236 kb on - strand, within BBR_RS13890at 896.251 kb on - strand, within BBR_RS13890at 896.265 kb on + strand, within BBR_RS13890at 896.265 kb on + strand, within BBR_RS13890at 896.304 kb on + strand, within BBR_RS13890at 896.306 kb on + strand, within BBR_RS13890at 896.321 kb on + strand, within BBR_RS13890at 896.326 kb on + strand, within BBR_RS13890at 896.409 kb on + strand, within BBR_RS13890at 896.414 kb on + strand, within BBR_RS13890at 896.425 kb on + strand, within BBR_RS13890at 896.462 kb on + strand, within BBR_RS13890at 896.462 kb on + strand, within BBR_RS13890at 896.464 kb on + strand, within BBR_RS13890at 896.472 kb on + strand, within BBR_RS13890at 896.506 kb on + strand, within BBR_RS13890at 896.513 kb on - strand, within BBR_RS13890at 896.540 kb on + strand, within BBR_RS13890at 896.550 kb on - strand, within BBR_RS13890at 896.569 kb on + strand, within BBR_RS13890at 896.574 kb on + strand, within BBR_RS13890at 896.574 kb on + strand, within BBR_RS13890at 896.579 kb on + strand, within BBR_RS13890at 896.584 kb on + strand, within BBR_RS13890at 896.589 kb on + strand, within BBR_RS13890at 896.600 kb on + strand, within BBR_RS13890at 896.604 kb on + strand, within BBR_RS13890at 896.661 kb on + strand, within BBR_RS13890at 896.720 kb on + strand, within BBR_RS13890at 896.839 kb on + strand, within BBR_RS13890at 896.845 kb on + strand, within BBR_RS13890at 896.902 kb on + strand, within BBR_RS13890at 896.920 kb on + strand, within BBR_RS13890at 896.930 kb on + strand, within BBR_RS13890at 896.976 kb on + strand, within BBR_RS13890at 897.025 kb on + strand, within BBR_RS13890at 897.033 kb on - strand, within BBR_RS13890at 897.044 kb on - strand, within BBR_RS13890at 897.047 kb on + strand, within BBR_RS13890at 897.055 kb on - strandat 897.073 kb on + strandat 897.124 kb on + strandat 897.147 kb on + strandat 897.155 kb on - strandat 897.185 kb on + strandat 897.185 kb on + strandat 897.218 kb on - strandat 897.299 kb on + strandat 897.336 kb on - strandat 897.344 kb on + strandat 897.352 kb on + strandat 897.360 kb on - strandat 897.409 kb on + strandat 897.475 kb on - strandat 897.492 kb on + strandat 897.514 kb on + strand, within BBR_RS13895at 897.585 kb on + strand, within BBR_RS13895at 897.667 kb on + strand, within BBR_RS13895at 897.668 kb on - strand, within BBR_RS13895at 897.697 kb on + strand, within BBR_RS13895at 897.742 kb on + strand, within BBR_RS13895at 897.775 kb on + strand, within BBR_RS13895at 897.834 kb on + strand, within BBR_RS13895at 897.880 kb on + strand, within BBR_RS13895at 897.918 kb on - strand, within BBR_RS13895at 897.984 kb on + strand, within BBR_RS13895at 898.000 kb on - strand, within BBR_RS13895at 898.130 kb on + strand, within BBR_RS13895

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
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894,999 + -0.3
895,087 + BBR_RS13885 0.17 +0.2
895,087 + BBR_RS13885 0.17 -0.6
895,092 + BBR_RS13885 0.17 -0.7
895,095 - BBR_RS13885 0.17 +0.1
895,095 - BBR_RS13885 0.17 -0.1
895,156 + BBR_RS13885 0.23 +4.0
895,193 + BBR_RS13885 0.26 -0.9
895,281 + BBR_RS13885 0.34 +0.1
895,283 + BBR_RS13885 0.35 +3.2
895,342 + BBR_RS13885 0.40 -0.1
895,342 + BBR_RS13885 0.40 +0.6
895,342 + BBR_RS13885 0.40 -0.4
895,344 - BBR_RS13885 0.40 +1.0
895,371 + BBR_RS13885 0.43 -2.6
895,383 + BBR_RS13885 0.44 -1.5
895,386 + BBR_RS13885 0.44 -2.0
895,415 + BBR_RS13885 0.47 -1.0
895,421 + BBR_RS13885 0.47 -0.7
895,429 - BBR_RS13885 0.48 +1.4
895,465 - BBR_RS13885 0.51 +2.5
895,468 + BBR_RS13885 0.51 +1.3
895,542 - BBR_RS13885 0.58 +2.5
895,542 - BBR_RS13885 0.58 -1.0
895,600 + BBR_RS13885 0.63 +2.6
895,627 + BBR_RS13885 0.66 +0.3
895,663 + BBR_RS13885 0.69 +3.7
895,663 + BBR_RS13885 0.69 +3.9
895,681 - BBR_RS13885 0.71 +1.9
895,708 + BBR_RS13885 0.73 -0.4
895,708 + BBR_RS13885 0.73 +3.6
895,708 + BBR_RS13885 0.73 -1.2
895,708 + BBR_RS13885 0.73 +1.4
895,716 - BBR_RS13885 0.74 -2.4
895,716 - BBR_RS13885 0.74 -1.6
895,723 + BBR_RS13885 0.75 -0.7
895,763 + BBR_RS13885 0.78 +1.8
895,771 - BBR_RS13885 0.79 -1.4
895,771 - BBR_RS13885 0.79 -2.3
895,771 - BBR_RS13885 0.79 -0.7
895,794 - BBR_RS13885 0.81 +0.5
895,806 + BBR_RS13885 0.82 +0.3
895,848 - BBR_RS13885 0.86 +2.8
895,894 + +2.0
895,914 - +3.1
895,949 - -0.5
895,973 - +1.8
895,983 - +1.2
895,986 + -1.7
895,986 + +0.3
895,986 + +3.8
895,986 + +0.7
895,986 + +0.9
895,986 + -0.1
895,988 + -0.8
895,988 + -0.5
895,989 - +0.1
895,989 - +0.2
896,062 + -2.7
896,094 - +3.5
896,112 + +3.1
896,141 + BBR_RS13890 0.12 -0.7
896,141 + BBR_RS13890 0.12 +0.3
896,144 - BBR_RS13890 0.13 +0.3
896,149 + BBR_RS13890 0.13 -0.4
896,149 + BBR_RS13890 0.13 +1.2
896,152 + BBR_RS13890 0.13 -2.4
896,163 + BBR_RS13890 0.14 +1.4
896,170 + BBR_RS13890 0.15 +1.7
896,223 + BBR_RS13890 0.19 -0.7
896,231 + BBR_RS13890 0.20 -0.8
896,236 - BBR_RS13890 0.20 +2.8
896,251 - BBR_RS13890 0.22 +1.8
896,265 + BBR_RS13890 0.23 -1.0
896,265 + BBR_RS13890 0.23 +0.5
896,304 + BBR_RS13890 0.26 -1.4
896,306 + BBR_RS13890 0.26 -2.4
896,321 + BBR_RS13890 0.28 -2.4
896,326 + BBR_RS13890 0.28 -2.6
896,409 + BBR_RS13890 0.35 +0.1
896,414 + BBR_RS13890 0.36 -1.4
896,425 + BBR_RS13890 0.36 -1.6
896,462 + BBR_RS13890 0.40 -2.6
896,462 + BBR_RS13890 0.40 -1.8
896,464 + BBR_RS13890 0.40 +1.0
896,472 + BBR_RS13890 0.40 -1.7
896,506 + BBR_RS13890 0.43 +1.1
896,513 - BBR_RS13890 0.44 -0.9
896,540 + BBR_RS13890 0.46 -1.3
896,550 - BBR_RS13890 0.47 +1.1
896,569 + BBR_RS13890 0.49 -1.1
896,574 + BBR_RS13890 0.49 +0.4
896,574 + BBR_RS13890 0.49 -0.5
896,579 + BBR_RS13890 0.50 +1.6
896,584 + BBR_RS13890 0.50 -1.2
896,589 + BBR_RS13890 0.50 +1.7
896,600 + BBR_RS13890 0.51 -0.0
896,604 + BBR_RS13890 0.52 -0.3
896,661 + BBR_RS13890 0.57 +0.9
896,720 + BBR_RS13890 0.62 -1.6
896,839 + BBR_RS13890 0.72 -2.2
896,845 + BBR_RS13890 0.72 -2.3
896,902 + BBR_RS13890 0.77 -0.1
896,920 + BBR_RS13890 0.79 -0.5
896,930 + BBR_RS13890 0.79 +0.4
896,976 + BBR_RS13890 0.83 -2.2
897,025 + BBR_RS13890 0.88 -0.6
897,033 - BBR_RS13890 0.88 +1.2
897,044 - BBR_RS13890 0.89 -0.5
897,047 + BBR_RS13890 0.89 +1.8
897,055 - +0.3
897,073 + -1.1
897,124 + -2.7
897,147 + +3.0
897,155 - -2.0
897,185 + -1.3
897,185 + -2.2
897,218 - -2.1
897,299 + +3.0
897,336 - -1.4
897,344 + -0.5
897,352 + -1.2
897,360 - -2.7
897,409 + +0.5
897,475 - +0.2
897,492 + -1.7
897,514 + BBR_RS13895 0.12 -2.4
897,585 + BBR_RS13895 0.19 -1.1
897,667 + BBR_RS13895 0.28 -2.1
897,668 - BBR_RS13895 0.28 +4.8
897,697 + BBR_RS13895 0.31 +1.1
897,742 + BBR_RS13895 0.36 -0.7
897,775 + BBR_RS13895 0.39 -1.0
897,834 + BBR_RS13895 0.45 -2.6
897,880 + BBR_RS13895 0.50 -2.1
897,918 - BBR_RS13895 0.54 +3.2
897,984 + BBR_RS13895 0.61 +1.3
898,000 - BBR_RS13895 0.63 +2.0
898,130 + BBR_RS13895 0.76 +1.5

Or see this region's nucleotide sequence