Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13445 and BBR_RS13450 are separated by 207 nucleotides BBR_RS13450 and BBR_RS13455 are separated by 81 nucleotides
BBR_RS13445: BBR_RS13445 - phosphoribosylformylglycinamidine synthase, at 786,763 to 790,497
_RS13445
BBR_RS13450: BBR_RS13450 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 790,705 to 791,457
_RS13450
BBR_RS13455: BBR_RS13455 - formate-dependent phosphoribosylglycinamide formyltransferase, at 791,539 to 792,840
_RS13455
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.707 kb on - strand, within BBR_RS13445 at 789.744 kb on + strand, within BBR_RS13445 at 789.799 kb on + strand, within BBR_RS13445 at 789.799 kb on + strand, within BBR_RS13445 at 789.807 kb on - strand, within BBR_RS13445 at 789.807 kb on - strand, within BBR_RS13445 at 789.807 kb on - strand, within BBR_RS13445 at 789.839 kb on + strand, within BBR_RS13445 at 789.842 kb on - strand, within BBR_RS13445 at 789.842 kb on - strand, within BBR_RS13445 at 789.842 kb on - strand, within BBR_RS13445 at 789.847 kb on - strand, within BBR_RS13445 at 789.940 kb on - strand, within BBR_RS13445 at 789.995 kb on - strand, within BBR_RS13445 at 790.004 kb on + strand, within BBR_RS13445 at 790.011 kb on - strand, within BBR_RS13445 at 790.060 kb on - strand, within BBR_RS13445 at 790.072 kb on + strand, within BBR_RS13445 at 790.073 kb on + strand, within BBR_RS13445 at 790.149 kb on + strand at 790.258 kb on + strand at 790.323 kb on + strand at 790.350 kb on + strand at 790.355 kb on - strand at 790.360 kb on + strand at 790.361 kb on + strand at 790.410 kb on + strand at 790.616 kb on + strand at 790.662 kb on - strand at 790.673 kb on + strand at 790.688 kb on + strand at 790.724 kb on + strand at 790.730 kb on + strand at 790.786 kb on + strand, within BBR_RS13450 at 791.041 kb on + strand, within BBR_RS13450 at 791.041 kb on + strand, within BBR_RS13450 at 791.098 kb on + strand, within BBR_RS13450 at 791.341 kb on + strand, within BBR_RS13450 at 791.408 kb on + strand at 791.472 kb on - strand at 791.490 kb on + strand at 791.520 kb on - strand at 791.523 kb on + strand at 791.526 kb on - strand at 791.598 kb on - strand at 791.630 kb on + strand at 791.754 kb on - strand, within BBR_RS13455 at 791.791 kb on + strand, within BBR_RS13455 at 791.854 kb on + strand, within BBR_RS13455 at 791.916 kb on - strand, within BBR_RS13455 at 791.940 kb on + strand, within BBR_RS13455 at 792.175 kb on + strand, within BBR_RS13455 at 792.241 kb on - strand, within BBR_RS13455 at 792.304 kb on + strand, within BBR_RS13455
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 789,707 - BBR_RS13445 0.79 -0.7 789,744 + BBR_RS13445 0.80 -1.6 789,799 + BBR_RS13445 0.81 +0.1 789,799 + BBR_RS13445 0.81 -0.6 789,807 - BBR_RS13445 0.81 +0.3 789,807 - BBR_RS13445 0.81 +0.3 789,807 - BBR_RS13445 0.81 -0.4 789,839 + BBR_RS13445 0.82 +0.4 789,842 - BBR_RS13445 0.82 -0.2 789,842 - BBR_RS13445 0.82 +0.0 789,842 - BBR_RS13445 0.82 -1.0 789,847 - BBR_RS13445 0.83 -0.5 789,940 - BBR_RS13445 0.85 -1.3 789,995 - BBR_RS13445 0.87 +0.3 790,004 + BBR_RS13445 0.87 -1.3 790,011 - BBR_RS13445 0.87 -0.2 790,060 - BBR_RS13445 0.88 -3.3 790,072 + BBR_RS13445 0.89 -1.6 790,073 + BBR_RS13445 0.89 -0.2 790,149 + -0.4 790,258 + -1.6 790,323 + +1.1 790,350 + +0.5 790,355 - -0.4 790,360 + +1.0 790,361 + -0.6 790,410 + +0.2 790,616 + -1.2 790,662 - +0.4 790,673 + -2.0 790,688 + -0.7 790,724 + -1.5 790,730 + -0.3 790,786 + BBR_RS13450 0.11 +2.0 791,041 + BBR_RS13450 0.45 +0.1 791,041 + BBR_RS13450 0.45 +0.1 791,098 + BBR_RS13450 0.52 -1.1 791,341 + BBR_RS13450 0.84 -0.5 791,408 + -0.3 791,472 - -3.4 791,490 + -1.2 791,520 - -1.7 791,523 + +0.8 791,526 - -1.9 791,598 - +1.8 791,630 + -0.1 791,754 - BBR_RS13455 0.17 +0.8 791,791 + BBR_RS13455 0.19 +2.0 791,854 + BBR_RS13455 0.24 +1.5 791,916 - BBR_RS13455 0.29 +0.0 791,940 + BBR_RS13455 0.31 +0.9 792,175 + BBR_RS13455 0.49 +0.6 792,241 - BBR_RS13455 0.54 -1.0 792,304 + BBR_RS13455 0.59 -0.3
Or see this region's nucleotide sequence