Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13440 and BBR_RS13445 are separated by 137 nucleotides BBR_RS13445 and BBR_RS13450 are separated by 207 nucleotides
BBR_RS13440: BBR_RS13440 - alpha/beta hydrolase, at 785,288 to 786,625
_RS13440
BBR_RS13445: BBR_RS13445 - phosphoribosylformylglycinamidine synthase, at 786,763 to 790,497
_RS13445
BBR_RS13450: BBR_RS13450 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 790,705 to 791,457
_RS13450
Position (kb) 786
787
788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 785.769 kb on + strand, within BBR_RS13440 at 785.883 kb on + strand, within BBR_RS13440 at 785.934 kb on - strand, within BBR_RS13440 at 786.057 kb on - strand, within BBR_RS13440 at 786.064 kb on + strand, within BBR_RS13440 at 786.069 kb on + strand, within BBR_RS13440 at 786.101 kb on + strand, within BBR_RS13440 at 786.109 kb on - strand, within BBR_RS13440 at 786.177 kb on + strand, within BBR_RS13440 at 786.208 kb on + strand, within BBR_RS13440 at 786.216 kb on - strand, within BBR_RS13440 at 786.216 kb on - strand, within BBR_RS13440 at 786.221 kb on - strand, within BBR_RS13440 at 786.221 kb on - strand, within BBR_RS13440 at 786.230 kb on - strand, within BBR_RS13440 at 786.308 kb on + strand, within BBR_RS13440 at 786.314 kb on + strand, within BBR_RS13440 at 786.345 kb on - strand, within BBR_RS13440 at 786.406 kb on - strand, within BBR_RS13440 at 786.406 kb on - strand, within BBR_RS13440 at 786.426 kb on + strand, within BBR_RS13440 at 786.469 kb on - strand, within BBR_RS13440 at 786.550 kb on - strand at 786.602 kb on + strand at 786.633 kb on + strand at 786.675 kb on - strand at 786.680 kb on - strand at 786.727 kb on + strand at 786.727 kb on + strand at 786.728 kb on - strand at 786.728 kb on - strand at 786.735 kb on - strand at 786.883 kb on + strand at 786.908 kb on - strand at 786.912 kb on + strand at 786.952 kb on - strand at 786.965 kb on + strand at 787.003 kb on - strand at 787.069 kb on - strand at 787.069 kb on - strand at 787.082 kb on + strand at 787.092 kb on + strand at 787.162 kb on + strand, within BBR_RS13445 at 787.228 kb on - strand, within BBR_RS13445 at 787.284 kb on + strand, within BBR_RS13445 at 787.328 kb on + strand, within BBR_RS13445 at 787.591 kb on + strand, within BBR_RS13445 at 787.700 kb on + strand, within BBR_RS13445 at 787.823 kb on + strand, within BBR_RS13445 at 787.840 kb on - strand, within BBR_RS13445 at 787.844 kb on - strand, within BBR_RS13445 at 787.886 kb on + strand, within BBR_RS13445 at 787.926 kb on - strand, within BBR_RS13445 at 787.927 kb on - strand, within BBR_RS13445 at 787.942 kb on - strand, within BBR_RS13445 at 788.000 kb on + strand, within BBR_RS13445 at 788.081 kb on + strand, within BBR_RS13445 at 788.314 kb on - strand, within BBR_RS13445 at 788.320 kb on - strand, within BBR_RS13445 at 788.348 kb on + strand, within BBR_RS13445 at 788.376 kb on + strand, within BBR_RS13445 at 788.380 kb on - strand, within BBR_RS13445 at 788.387 kb on - strand, within BBR_RS13445 at 788.416 kb on + strand, within BBR_RS13445 at 788.520 kb on + strand, within BBR_RS13445 at 788.539 kb on - strand, within BBR_RS13445 at 788.578 kb on - strand, within BBR_RS13445 at 788.653 kb on - strand, within BBR_RS13445 at 788.663 kb on + strand, within BBR_RS13445 at 788.678 kb on + strand, within BBR_RS13445 at 788.686 kb on - strand, within BBR_RS13445 at 788.854 kb on + strand, within BBR_RS13445 at 788.892 kb on + strand, within BBR_RS13445 at 788.897 kb on + strand, within BBR_RS13445 at 788.900 kb on - strand, within BBR_RS13445 at 788.910 kb on - strand, within BBR_RS13445 at 788.910 kb on - strand, within BBR_RS13445 at 788.910 kb on - strand, within BBR_RS13445 at 788.930 kb on + strand, within BBR_RS13445 at 789.069 kb on - strand, within BBR_RS13445 at 789.071 kb on - strand, within BBR_RS13445 at 789.079 kb on - strand, within BBR_RS13445 at 789.114 kb on + strand, within BBR_RS13445 at 789.119 kb on - strand, within BBR_RS13445 at 789.122 kb on - strand, within BBR_RS13445 at 789.127 kb on - strand, within BBR_RS13445 at 789.173 kb on - strand, within BBR_RS13445 at 789.259 kb on - strand, within BBR_RS13445 at 789.332 kb on + strand, within BBR_RS13445 at 789.378 kb on + strand, within BBR_RS13445 at 789.406 kb on - strand, within BBR_RS13445 at 789.423 kb on - strand, within BBR_RS13445 at 789.428 kb on - strand, within BBR_RS13445 at 789.428 kb on - strand, within BBR_RS13445 at 789.572 kb on - strand, within BBR_RS13445 at 789.589 kb on + strand, within BBR_RS13445 at 789.594 kb on + strand, within BBR_RS13445 at 789.607 kb on - strand, within BBR_RS13445 at 789.607 kb on - strand, within BBR_RS13445 at 789.607 kb on - strand, within BBR_RS13445 at 789.656 kb on + strand, within BBR_RS13445 at 789.699 kb on + strand, within BBR_RS13445 at 789.707 kb on - strand, within BBR_RS13445 at 789.744 kb on + strand, within BBR_RS13445 at 789.799 kb on + strand, within BBR_RS13445 at 789.799 kb on + strand, within BBR_RS13445 at 789.807 kb on - strand, within BBR_RS13445 at 789.807 kb on - strand, within BBR_RS13445 at 789.807 kb on - strand, within BBR_RS13445 at 789.839 kb on + strand, within BBR_RS13445 at 789.842 kb on - strand, within BBR_RS13445 at 789.842 kb on - strand, within BBR_RS13445 at 789.842 kb on - strand, within BBR_RS13445 at 789.847 kb on - strand, within BBR_RS13445 at 789.940 kb on - strand, within BBR_RS13445 at 789.995 kb on - strand, within BBR_RS13445 at 790.004 kb on + strand, within BBR_RS13445 at 790.011 kb on - strand, within BBR_RS13445 at 790.060 kb on - strand, within BBR_RS13445 at 790.072 kb on + strand, within BBR_RS13445 at 790.073 kb on + strand, within BBR_RS13445 at 790.149 kb on + strand at 790.258 kb on + strand at 790.323 kb on + strand at 790.350 kb on + strand at 790.355 kb on - strand at 790.360 kb on + strand at 790.361 kb on + strand at 790.410 kb on + strand at 790.616 kb on + strand at 790.662 kb on - strand at 790.673 kb on + strand at 790.688 kb on + strand at 790.724 kb on + strand at 790.730 kb on + strand at 790.786 kb on + strand, within BBR_RS13450 at 791.041 kb on + strand, within BBR_RS13450 at 791.041 kb on + strand, within BBR_RS13450 at 791.098 kb on + strand, within BBR_RS13450 at 791.341 kb on + strand, within BBR_RS13450 at 791.408 kb on + strand at 791.472 kb on - strand at 791.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 785,769 + BBR_RS13440 0.36 -1.0 785,883 + BBR_RS13440 0.44 +0.7 785,934 - BBR_RS13440 0.48 +3.1 786,057 - BBR_RS13440 0.57 -0.1 786,064 + BBR_RS13440 0.58 -1.3 786,069 + BBR_RS13440 0.58 +0.5 786,101 + BBR_RS13440 0.61 -2.4 786,109 - BBR_RS13440 0.61 -1.6 786,177 + BBR_RS13440 0.66 -0.1 786,208 + BBR_RS13440 0.69 -0.7 786,216 - BBR_RS13440 0.69 -3.0 786,216 - BBR_RS13440 0.69 +0.9 786,221 - BBR_RS13440 0.70 -2.7 786,221 - BBR_RS13440 0.70 +2.5 786,230 - BBR_RS13440 0.70 -0.4 786,308 + BBR_RS13440 0.76 +0.0 786,314 + BBR_RS13440 0.77 -1.8 786,345 - BBR_RS13440 0.79 -1.8 786,406 - BBR_RS13440 0.84 +0.2 786,406 - BBR_RS13440 0.84 +0.2 786,426 + BBR_RS13440 0.85 +0.7 786,469 - BBR_RS13440 0.88 -0.0 786,550 - +1.4 786,602 + +2.0 786,633 + +1.9 786,675 - +2.1 786,680 - +1.2 786,727 + +2.2 786,727 + -1.4 786,728 - -1.7 786,728 - +1.2 786,735 - +2.5 786,883 + +0.3 786,908 - +0.4 786,912 + +0.1 786,952 - -1.5 786,965 + -0.1 787,003 - -2.1 787,069 - -0.4 787,069 - -0.7 787,082 + -1.2 787,092 + +2.0 787,162 + BBR_RS13445 0.11 -1.0 787,228 - BBR_RS13445 0.12 -0.7 787,284 + BBR_RS13445 0.14 -1.1 787,328 + BBR_RS13445 0.15 +0.9 787,591 + BBR_RS13445 0.22 +1.0 787,700 + BBR_RS13445 0.25 +0.3 787,823 + BBR_RS13445 0.28 +0.5 787,840 - BBR_RS13445 0.29 +0.9 787,844 - BBR_RS13445 0.29 +1.0 787,886 + BBR_RS13445 0.30 +0.1 787,926 - BBR_RS13445 0.31 +1.3 787,927 - BBR_RS13445 0.31 +1.1 787,942 - BBR_RS13445 0.32 +0.8 788,000 + BBR_RS13445 0.33 +0.0 788,081 + BBR_RS13445 0.35 -0.2 788,314 - BBR_RS13445 0.42 +0.9 788,320 - BBR_RS13445 0.42 -0.9 788,348 + BBR_RS13445 0.42 +1.8 788,376 + BBR_RS13445 0.43 +0.1 788,380 - BBR_RS13445 0.43 -1.0 788,387 - BBR_RS13445 0.43 -0.0 788,416 + BBR_RS13445 0.44 -1.5 788,520 + BBR_RS13445 0.47 +1.8 788,539 - BBR_RS13445 0.48 +0.5 788,578 - BBR_RS13445 0.49 +2.5 788,653 - BBR_RS13445 0.51 -1.0 788,663 + BBR_RS13445 0.51 -0.4 788,678 + BBR_RS13445 0.51 -0.2 788,686 - BBR_RS13445 0.51 -0.3 788,854 + BBR_RS13445 0.56 +1.1 788,892 + BBR_RS13445 0.57 +1.6 788,897 + BBR_RS13445 0.57 -0.8 788,900 - BBR_RS13445 0.57 -0.0 788,910 - BBR_RS13445 0.57 -1.3 788,910 - BBR_RS13445 0.57 -0.7 788,910 - BBR_RS13445 0.57 -1.6 788,930 + BBR_RS13445 0.58 +0.3 789,069 - BBR_RS13445 0.62 -1.3 789,071 - BBR_RS13445 0.62 -1.6 789,079 - BBR_RS13445 0.62 -1.0 789,114 + BBR_RS13445 0.63 -0.8 789,119 - BBR_RS13445 0.63 -0.7 789,122 - BBR_RS13445 0.63 -0.9 789,127 - BBR_RS13445 0.63 -2.2 789,173 - BBR_RS13445 0.65 -0.9 789,259 - BBR_RS13445 0.67 -0.3 789,332 + BBR_RS13445 0.69 +0.2 789,378 + BBR_RS13445 0.70 +1.6 789,406 - BBR_RS13445 0.71 -1.7 789,423 - BBR_RS13445 0.71 -0.5 789,428 - BBR_RS13445 0.71 -0.0 789,428 - BBR_RS13445 0.71 +0.8 789,572 - BBR_RS13445 0.75 +0.0 789,589 + BBR_RS13445 0.76 +0.0 789,594 + BBR_RS13445 0.76 -0.1 789,607 - BBR_RS13445 0.76 -0.5 789,607 - BBR_RS13445 0.76 -1.9 789,607 - BBR_RS13445 0.76 -0.6 789,656 + BBR_RS13445 0.77 +0.5 789,699 + BBR_RS13445 0.79 -0.4 789,707 - BBR_RS13445 0.79 -0.7 789,744 + BBR_RS13445 0.80 -1.6 789,799 + BBR_RS13445 0.81 +0.1 789,799 + BBR_RS13445 0.81 -0.6 789,807 - BBR_RS13445 0.81 +0.3 789,807 - BBR_RS13445 0.81 +0.3 789,807 - BBR_RS13445 0.81 -0.4 789,839 + BBR_RS13445 0.82 +0.4 789,842 - BBR_RS13445 0.82 -0.2 789,842 - BBR_RS13445 0.82 +0.0 789,842 - BBR_RS13445 0.82 -1.0 789,847 - BBR_RS13445 0.83 -0.5 789,940 - BBR_RS13445 0.85 -1.3 789,995 - BBR_RS13445 0.87 +0.3 790,004 + BBR_RS13445 0.87 -1.3 790,011 - BBR_RS13445 0.87 -0.2 790,060 - BBR_RS13445 0.88 -3.3 790,072 + BBR_RS13445 0.89 -1.6 790,073 + BBR_RS13445 0.89 -0.2 790,149 + -0.4 790,258 + -1.6 790,323 + +1.1 790,350 + +0.5 790,355 - -0.4 790,360 + +1.0 790,361 + -0.6 790,410 + +0.2 790,616 + -1.2 790,662 - +0.4 790,673 + -2.0 790,688 + -0.7 790,724 + -1.5 790,730 + -0.3 790,786 + BBR_RS13450 0.11 +2.0 791,041 + BBR_RS13450 0.45 +0.1 791,041 + BBR_RS13450 0.45 +0.1 791,098 + BBR_RS13450 0.52 -1.1 791,341 + BBR_RS13450 0.84 -0.5 791,408 + -0.3 791,472 - -3.4 791,490 + -1.2
Or see this region's nucleotide sequence