Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12900 and BBR_RS12905 are separated by 5 nucleotides BBR_RS12905 and BBR_RS12910 are separated by 17 nucleotides
BBR_RS12900: BBR_RS12900 - DeoR/GlpR transcriptional regulator, at 646,389 to 647,192
_RS12900
BBR_RS12905: BBR_RS12905 - galactose-1-phosphate uridylyltransferase, at 647,198 to 648,448
_RS12905
BBR_RS12910: BBR_RS12910 - galactokinase, at 648,466 to 649,716
_RS12910
Position (kb) 647
648
649 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 646.219 kb on - strand at 646.234 kb on + strand at 646.308 kb on - strand at 646.308 kb on - strand at 646.592 kb on - strand, within BBR_RS12900 at 646.962 kb on + strand, within BBR_RS12900 at 647.041 kb on + strand, within BBR_RS12900 at 647.049 kb on + strand, within BBR_RS12900 at 647.235 kb on + strand at 647.277 kb on + strand at 647.285 kb on - strand at 647.417 kb on + strand, within BBR_RS12905 at 647.765 kb on - strand, within BBR_RS12905 at 647.955 kb on - strand, within BBR_RS12905 at 648.176 kb on - strand, within BBR_RS12905 at 648.229 kb on - strand, within BBR_RS12905 at 648.483 kb on - strand at 648.483 kb on - strand at 648.489 kb on + strand at 648.497 kb on + strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.540 kb on + strand at 648.553 kb on + strand at 648.555 kb on + strand at 648.561 kb on - strand at 648.563 kb on - strand at 648.572 kb on - strand at 648.572 kb on - strand at 648.572 kb on - strand at 648.572 kb on - strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.584 kb on + strand at 648.584 kb on + strand at 648.592 kb on - strand, within BBR_RS12910 at 648.593 kb on + strand, within BBR_RS12910 at 648.618 kb on - strand, within BBR_RS12910 at 648.618 kb on - strand, within BBR_RS12910 at 648.649 kb on - strand, within BBR_RS12910 at 648.665 kb on + strand, within BBR_RS12910 at 648.665 kb on + strand, within BBR_RS12910 at 648.665 kb on + strand, within BBR_RS12910 at 648.673 kb on - strand, within BBR_RS12910 at 648.698 kb on - strand, within BBR_RS12910 at 648.712 kb on + strand, within BBR_RS12910 at 648.746 kb on + strand, within BBR_RS12910 at 648.746 kb on + strand, within BBR_RS12910 at 648.755 kb on - strand, within BBR_RS12910 at 648.783 kb on + strand, within BBR_RS12910 at 648.795 kb on + strand, within BBR_RS12910 at 648.816 kb on - strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.829 kb on + strand, within BBR_RS12910 at 648.836 kb on - strand, within BBR_RS12910 at 648.836 kb on - strand, within BBR_RS12910 at 648.837 kb on - strand, within BBR_RS12910 at 648.837 kb on - strand, within BBR_RS12910 at 648.850 kb on + strand, within BBR_RS12910 at 648.850 kb on + strand, within BBR_RS12910 at 648.856 kb on - strand, within BBR_RS12910 at 648.865 kb on + strand, within BBR_RS12910 at 648.872 kb on + strand, within BBR_RS12910 at 648.872 kb on + strand, within BBR_RS12910 at 648.872 kb on + strand, within BBR_RS12910 at 648.877 kb on + strand, within BBR_RS12910 at 648.880 kb on - strand, within BBR_RS12910 at 648.880 kb on - strand, within BBR_RS12910 at 648.895 kb on + strand, within BBR_RS12910 at 648.895 kb on + strand, within BBR_RS12910 at 648.895 kb on + strand, within BBR_RS12910 at 648.903 kb on - strand, within BBR_RS12910 at 648.903 kb on - strand, within BBR_RS12910 at 648.914 kb on + strand, within BBR_RS12910 at 648.931 kb on + strand, within BBR_RS12910 at 648.939 kb on - strand, within BBR_RS12910 at 648.939 kb on - strand, within BBR_RS12910 at 648.946 kb on - strand, within BBR_RS12910 at 648.946 kb on - strand, within BBR_RS12910 at 648.951 kb on - strand, within BBR_RS12910 at 648.968 kb on + strand, within BBR_RS12910 at 648.973 kb on + strand, within BBR_RS12910 at 648.976 kb on - strand, within BBR_RS12910 at 648.981 kb on - strand, within BBR_RS12910 at 648.988 kb on + strand, within BBR_RS12910 at 648.988 kb on + strand, within BBR_RS12910 at 648.990 kb on + strand, within BBR_RS12910 at 649.019 kb on - strand, within BBR_RS12910 at 649.019 kb on - strand, within BBR_RS12910 at 649.022 kb on + strand, within BBR_RS12910 at 649.022 kb on + strand, within BBR_RS12910 at 649.031 kb on + strand, within BBR_RS12910 at 649.031 kb on + strand, within BBR_RS12910 at 649.031 kb on + strand, within BBR_RS12910 at 649.039 kb on - strand, within BBR_RS12910 at 649.039 kb on - strand, within BBR_RS12910 at 649.053 kb on + strand, within BBR_RS12910 at 649.075 kb on - strand, within BBR_RS12910 at 649.121 kb on - strand, within BBR_RS12910 at 649.144 kb on - strand, within BBR_RS12910 at 649.144 kb on - strand, within BBR_RS12910 at 649.146 kb on + strand, within BBR_RS12910 at 649.146 kb on + strand, within BBR_RS12910 at 649.154 kb on - strand, within BBR_RS12910 at 649.154 kb on - strand, within BBR_RS12910 at 649.169 kb on - strand, within BBR_RS12910 at 649.203 kb on + strand, within BBR_RS12910 at 649.203 kb on + strand, within BBR_RS12910 at 649.223 kb on - strand, within BBR_RS12910 at 649.255 kb on + strand, within BBR_RS12910 at 649.255 kb on + strand, within BBR_RS12910 at 649.287 kb on + strand, within BBR_RS12910 at 649.295 kb on - strand, within BBR_RS12910 at 649.305 kb on + strand, within BBR_RS12910 at 649.305 kb on + strand, within BBR_RS12910 at 649.313 kb on - strand, within BBR_RS12910 at 649.313 kb on - strand, within BBR_RS12910 at 649.313 kb on - strand, within BBR_RS12910 at 649.408 kb on - strand, within BBR_RS12910 at 649.420 kb on - strand, within BBR_RS12910 at 649.420 kb on - strand, within BBR_RS12910 at 649.428 kb on + strand, within BBR_RS12910 at 649.428 kb on + strand, within BBR_RS12910
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 646,219 - +1.1 646,234 + -0.9 646,308 - -0.7 646,308 - -0.3 646,592 - BBR_RS12900 0.25 +0.1 646,962 + BBR_RS12900 0.71 -0.7 647,041 + BBR_RS12900 0.81 -1.9 647,049 + BBR_RS12900 0.82 -1.4 647,235 + +0.1 647,277 + +0.2 647,285 - -0.6 647,417 + BBR_RS12905 0.18 -2.2 647,765 - BBR_RS12905 0.45 +1.4 647,955 - BBR_RS12905 0.61 -0.1 648,176 - BBR_RS12905 0.78 +1.8 648,229 - BBR_RS12905 0.82 -0.5 648,483 - -2.5 648,483 - -1.8 648,489 + -2.0 648,497 + -1.9 648,505 - -1.5 648,505 - -0.8 648,505 - -1.6 648,505 - -1.3 648,505 - -2.3 648,540 + -1.5 648,553 + -2.3 648,555 + -3.6 648,561 - -0.3 648,563 - -0.3 648,572 - -1.8 648,572 - -0.9 648,572 - -3.0 648,572 - -3.2 648,574 + -1.8 648,574 + -1.9 648,574 + -2.1 648,574 + -0.8 648,574 + -2.3 648,574 + -2.9 648,574 + -0.9 648,574 + -2.0 648,574 + -2.5 648,574 + -1.5 648,574 + -4.6 648,574 + -1.1 648,574 + -2.1 648,574 + -1.6 648,574 + -3.7 648,574 + -0.8 648,574 + -2.1 648,582 - -1.5 648,582 - -0.2 648,582 - -3.1 648,582 - -2.4 648,582 - -1.7 648,582 - +1.0 648,582 - +0.1 648,582 - -0.8 648,582 - -1.9 648,584 + -2.8 648,584 + -1.1 648,592 - BBR_RS12910 0.10 -3.1 648,593 + BBR_RS12910 0.10 -2.8 648,618 - BBR_RS12910 0.12 -1.5 648,618 - BBR_RS12910 0.12 -1.3 648,649 - BBR_RS12910 0.15 -1.7 648,665 + BBR_RS12910 0.16 -2.0 648,665 + BBR_RS12910 0.16 -0.9 648,665 + BBR_RS12910 0.16 -1.5 648,673 - BBR_RS12910 0.17 -0.1 648,698 - BBR_RS12910 0.19 -1.5 648,712 + BBR_RS12910 0.20 -0.5 648,746 + BBR_RS12910 0.22 -2.2 648,746 + BBR_RS12910 0.22 -0.9 648,755 - BBR_RS12910 0.23 +1.2 648,783 + BBR_RS12910 0.25 -1.7 648,795 + BBR_RS12910 0.26 -2.0 648,816 - BBR_RS12910 0.28 -0.8 648,828 + BBR_RS12910 0.29 -1.2 648,828 + BBR_RS12910 0.29 -2.0 648,828 + BBR_RS12910 0.29 -1.6 648,828 + BBR_RS12910 0.29 +0.1 648,828 + BBR_RS12910 0.29 -0.3 648,828 + BBR_RS12910 0.29 -3.3 648,829 + BBR_RS12910 0.29 -1.7 648,836 - BBR_RS12910 0.30 -2.1 648,836 - BBR_RS12910 0.30 -0.6 648,837 - BBR_RS12910 0.30 +0.3 648,837 - BBR_RS12910 0.30 -3.5 648,850 + BBR_RS12910 0.31 -0.8 648,850 + BBR_RS12910 0.31 -0.8 648,856 - BBR_RS12910 0.31 -1.3 648,865 + BBR_RS12910 0.32 -2.5 648,872 + BBR_RS12910 0.32 +1.2 648,872 + BBR_RS12910 0.32 -1.6 648,872 + BBR_RS12910 0.32 -1.3 648,877 + BBR_RS12910 0.33 -0.2 648,880 - BBR_RS12910 0.33 -3.5 648,880 - BBR_RS12910 0.33 -2.5 648,895 + BBR_RS12910 0.34 -3.0 648,895 + BBR_RS12910 0.34 -2.7 648,895 + BBR_RS12910 0.34 -1.9 648,903 - BBR_RS12910 0.35 +0.5 648,903 - BBR_RS12910 0.35 -2.3 648,914 + BBR_RS12910 0.36 -1.4 648,931 + BBR_RS12910 0.37 -1.9 648,939 - BBR_RS12910 0.38 -2.6 648,939 - BBR_RS12910 0.38 -3.3 648,946 - BBR_RS12910 0.38 -1.5 648,946 - BBR_RS12910 0.38 -1.7 648,951 - BBR_RS12910 0.39 -0.9 648,968 + BBR_RS12910 0.40 -1.0 648,973 + BBR_RS12910 0.41 -2.7 648,976 - BBR_RS12910 0.41 -1.1 648,981 - BBR_RS12910 0.41 -2.3 648,988 + BBR_RS12910 0.42 -2.1 648,988 + BBR_RS12910 0.42 -1.9 648,990 + BBR_RS12910 0.42 -2.1 649,019 - BBR_RS12910 0.44 -2.3 649,019 - BBR_RS12910 0.44 -2.7 649,022 + BBR_RS12910 0.44 -1.7 649,022 + BBR_RS12910 0.44 -1.9 649,031 + BBR_RS12910 0.45 -0.2 649,031 + BBR_RS12910 0.45 -4.5 649,031 + BBR_RS12910 0.45 -2.1 649,039 - BBR_RS12910 0.46 -2.7 649,039 - BBR_RS12910 0.46 -1.7 649,053 + BBR_RS12910 0.47 -1.7 649,075 - BBR_RS12910 0.49 -1.8 649,121 - BBR_RS12910 0.52 -0.0 649,144 - BBR_RS12910 0.54 -1.7 649,144 - BBR_RS12910 0.54 -1.9 649,146 + BBR_RS12910 0.54 -2.6 649,146 + BBR_RS12910 0.54 -2.7 649,154 - BBR_RS12910 0.55 -4.1 649,154 - BBR_RS12910 0.55 -0.9 649,169 - BBR_RS12910 0.56 -1.8 649,203 + BBR_RS12910 0.59 -0.8 649,203 + BBR_RS12910 0.59 -0.1 649,223 - BBR_RS12910 0.61 -0.9 649,255 + BBR_RS12910 0.63 -1.6 649,255 + BBR_RS12910 0.63 -2.4 649,287 + BBR_RS12910 0.66 -1.9 649,295 - BBR_RS12910 0.66 -1.5 649,305 + BBR_RS12910 0.67 -0.8 649,305 + BBR_RS12910 0.67 -1.1 649,313 - BBR_RS12910 0.68 +0.1 649,313 - BBR_RS12910 0.68 -2.1 649,313 - BBR_RS12910 0.68 -2.8 649,408 - BBR_RS12910 0.75 -1.1 649,420 - BBR_RS12910 0.76 -2.1 649,420 - BBR_RS12910 0.76 -1.9 649,428 + BBR_RS12910 0.77 -1.7 649,428 + BBR_RS12910 0.77 -3.5
Or see this region's nucleotide sequence