Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12890 and BBR_RS12895 are separated by 145 nucleotides BBR_RS12895 and BBR_RS12900 are separated by 305 nucleotides
BBR_RS12890: BBR_RS12890 - NADH:flavin oxidoreductase/NADH oxidase, at 643,482 to 644,786
_RS12890
BBR_RS12895: BBR_RS12895 - quinone-dependent dihydroorotate dehydrogenase, at 644,932 to 646,083
_RS12895
BBR_RS12900: BBR_RS12900 - DeoR/GlpR transcriptional regulator, at 646,389 to 647,192
_RS12900
Position (kb) 644
645
646
647 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 643.982 kb on + strand, within BBR_RS12890 at 643.990 kb on - strand, within BBR_RS12890 at 643.996 kb on + strand, within BBR_RS12890 at 644.027 kb on + strand, within BBR_RS12890 at 644.029 kb on - strand, within BBR_RS12890 at 644.029 kb on - strand, within BBR_RS12890 at 644.035 kb on - strand, within BBR_RS12890 at 644.039 kb on - strand, within BBR_RS12890 at 644.068 kb on - strand, within BBR_RS12890 at 644.096 kb on - strand, within BBR_RS12890 at 644.098 kb on + strand, within BBR_RS12890 at 644.098 kb on + strand, within BBR_RS12890 at 644.158 kb on - strand, within BBR_RS12890 at 644.158 kb on - strand, within BBR_RS12890 at 644.174 kb on + strand, within BBR_RS12890 at 644.174 kb on + strand, within BBR_RS12890 at 644.183 kb on - strand, within BBR_RS12890 at 644.244 kb on + strand, within BBR_RS12890 at 644.244 kb on + strand, within BBR_RS12890 at 644.267 kb on + strand, within BBR_RS12890 at 644.300 kb on - strand, within BBR_RS12890 at 644.313 kb on + strand, within BBR_RS12890 at 644.321 kb on - strand, within BBR_RS12890 at 644.321 kb on - strand, within BBR_RS12890 at 644.360 kb on + strand, within BBR_RS12890 at 644.360 kb on + strand, within BBR_RS12890 at 644.360 kb on + strand, within BBR_RS12890 at 644.378 kb on - strand, within BBR_RS12890 at 644.388 kb on + strand, within BBR_RS12890 at 644.396 kb on - strand, within BBR_RS12890 at 644.436 kb on - strand, within BBR_RS12890 at 644.448 kb on + strand, within BBR_RS12890 at 644.479 kb on + strand, within BBR_RS12890 at 644.492 kb on - strand, within BBR_RS12890 at 644.492 kb on - strand, within BBR_RS12890 at 644.548 kb on + strand, within BBR_RS12890 at 644.615 kb on - strand, within BBR_RS12890 at 644.651 kb on + strand, within BBR_RS12890 at 644.672 kb on + strand at 644.680 kb on + strand at 644.688 kb on - strand at 644.710 kb on + strand at 644.750 kb on + strand at 644.758 kb on - strand at 644.768 kb on - strand at 644.775 kb on + strand at 644.775 kb on + strand at 644.788 kb on - strand at 644.789 kb on + strand at 644.811 kb on + strand at 644.869 kb on + strand at 644.877 kb on - strand at 644.877 kb on - strand at 644.883 kb on + strand at 644.883 kb on - strand at 644.883 kb on - strand at 644.893 kb on + strand at 644.948 kb on - strand at 645.015 kb on - strand at 645.038 kb on - strand at 645.038 kb on - strand at 645.074 kb on - strand, within BBR_RS12895 at 645.074 kb on - strand, within BBR_RS12895 at 645.074 kb on - strand, within BBR_RS12895 at 645.074 kb on - strand, within BBR_RS12895 at 645.094 kb on + strand, within BBR_RS12895 at 645.097 kb on - strand, within BBR_RS12895 at 645.146 kb on + strand, within BBR_RS12895 at 645.151 kb on + strand, within BBR_RS12895 at 645.154 kb on - strand, within BBR_RS12895 at 645.179 kb on + strand, within BBR_RS12895 at 645.187 kb on - strand, within BBR_RS12895 at 645.200 kb on + strand, within BBR_RS12895 at 645.224 kb on - strand, within BBR_RS12895 at 645.234 kb on + strand, within BBR_RS12895 at 645.252 kb on - strand, within BBR_RS12895 at 645.277 kb on + strand, within BBR_RS12895 at 645.279 kb on - strand, within BBR_RS12895 at 645.285 kb on - strand, within BBR_RS12895 at 645.285 kb on - strand, within BBR_RS12895 at 645.285 kb on - strand, within BBR_RS12895 at 645.289 kb on + strand, within BBR_RS12895 at 645.295 kb on + strand, within BBR_RS12895 at 645.314 kb on + strand, within BBR_RS12895 at 645.320 kb on - strand, within BBR_RS12895 at 645.320 kb on - strand, within BBR_RS12895 at 645.326 kb on + strand, within BBR_RS12895 at 645.334 kb on - strand, within BBR_RS12895 at 645.334 kb on - strand, within BBR_RS12895 at 645.334 kb on - strand, within BBR_RS12895 at 645.345 kb on - strand, within BBR_RS12895 at 645.345 kb on - strand, within BBR_RS12895 at 645.347 kb on + strand, within BBR_RS12895 at 645.355 kb on - strand, within BBR_RS12895 at 645.357 kb on + strand, within BBR_RS12895 at 645.357 kb on + strand, within BBR_RS12895 at 645.385 kb on - strand, within BBR_RS12895 at 645.411 kb on - strand, within BBR_RS12895 at 645.444 kb on - strand, within BBR_RS12895 at 645.512 kb on + strand, within BBR_RS12895 at 645.539 kb on + strand, within BBR_RS12895 at 645.596 kb on + strand, within BBR_RS12895 at 645.604 kb on - strand, within BBR_RS12895 at 645.609 kb on - strand, within BBR_RS12895 at 645.609 kb on - strand, within BBR_RS12895 at 645.646 kb on + strand, within BBR_RS12895 at 645.698 kb on + strand, within BBR_RS12895 at 645.706 kb on - strand, within BBR_RS12895 at 645.715 kb on + strand, within BBR_RS12895 at 645.723 kb on - strand, within BBR_RS12895 at 645.726 kb on + strand, within BBR_RS12895 at 645.734 kb on - strand, within BBR_RS12895 at 645.770 kb on - strand, within BBR_RS12895 at 645.875 kb on + strand, within BBR_RS12895 at 645.875 kb on + strand, within BBR_RS12895 at 645.875 kb on + strand, within BBR_RS12895 at 645.883 kb on - strand, within BBR_RS12895 at 645.883 kb on - strand, within BBR_RS12895 at 645.883 kb on - strand, within BBR_RS12895 at 645.883 kb on - strand, within BBR_RS12895 at 645.885 kb on - strand, within BBR_RS12895 at 645.907 kb on - strand, within BBR_RS12895 at 645.911 kb on + strand, within BBR_RS12895 at 645.914 kb on - strand, within BBR_RS12895 at 645.927 kb on - strand, within BBR_RS12895 at 646.013 kb on - strand at 646.026 kb on + strand at 646.034 kb on - strand at 646.034 kb on - strand at 646.090 kb on - strand at 646.111 kb on + strand at 646.173 kb on - strand at 646.173 kb on - strand at 646.177 kb on - strand at 646.219 kb on - strand at 646.234 kb on + strand at 646.308 kb on - strand at 646.308 kb on - strand at 646.592 kb on - strand, within BBR_RS12900 at 646.962 kb on + strand, within BBR_RS12900 at 647.041 kb on + strand, within BBR_RS12900 at 647.049 kb on + strand, within BBR_RS12900
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 643,982 + BBR_RS12890 0.38 +0.0 643,990 - BBR_RS12890 0.39 +4.1 643,996 + BBR_RS12890 0.39 +0.3 644,027 + BBR_RS12890 0.42 +1.8 644,029 - BBR_RS12890 0.42 +0.3 644,029 - BBR_RS12890 0.42 -3.2 644,035 - BBR_RS12890 0.42 +2.0 644,039 - BBR_RS12890 0.43 -0.3 644,068 - BBR_RS12890 0.45 +1.7 644,096 - BBR_RS12890 0.47 +1.5 644,098 + BBR_RS12890 0.47 +3.4 644,098 + BBR_RS12890 0.47 -0.4 644,158 - BBR_RS12890 0.52 +0.8 644,158 - BBR_RS12890 0.52 -1.5 644,174 + BBR_RS12890 0.53 -2.0 644,174 + BBR_RS12890 0.53 +0.3 644,183 - BBR_RS12890 0.54 +3.3 644,244 + BBR_RS12890 0.58 -1.0 644,244 + BBR_RS12890 0.58 +0.2 644,267 + BBR_RS12890 0.60 -1.3 644,300 - BBR_RS12890 0.63 -1.2 644,313 + BBR_RS12890 0.64 +2.0 644,321 - BBR_RS12890 0.64 -1.7 644,321 - BBR_RS12890 0.64 -0.2 644,360 + BBR_RS12890 0.67 -0.2 644,360 + BBR_RS12890 0.67 -0.3 644,360 + BBR_RS12890 0.67 -1.1 644,378 - BBR_RS12890 0.69 +1.5 644,388 + BBR_RS12890 0.69 -2.3 644,396 - BBR_RS12890 0.70 -1.3 644,436 - BBR_RS12890 0.73 +0.1 644,448 + BBR_RS12890 0.74 -1.6 644,479 + BBR_RS12890 0.76 +0.9 644,492 - BBR_RS12890 0.77 +0.9 644,492 - BBR_RS12890 0.77 -2.3 644,548 + BBR_RS12890 0.82 +1.2 644,615 - BBR_RS12890 0.87 -1.7 644,651 + BBR_RS12890 0.90 +2.5 644,672 + -0.9 644,680 + -1.7 644,688 - -0.1 644,710 + -1.8 644,750 + -0.2 644,758 - -0.8 644,768 - +1.7 644,775 + -0.2 644,775 + -1.0 644,788 - +3.8 644,789 + -1.6 644,811 + +0.4 644,869 + -0.7 644,877 - -1.5 644,877 - +0.3 644,883 + +0.6 644,883 - +3.0 644,883 - -1.5 644,893 + +1.8 644,948 - -1.5 645,015 - -2.5 645,038 - -1.7 645,038 - -1.8 645,074 - BBR_RS12895 0.12 -1.6 645,074 - BBR_RS12895 0.12 -2.1 645,074 - BBR_RS12895 0.12 -1.7 645,074 - BBR_RS12895 0.12 -0.3 645,094 + BBR_RS12895 0.14 -0.8 645,097 - BBR_RS12895 0.14 +0.7 645,146 + BBR_RS12895 0.19 -0.7 645,151 + BBR_RS12895 0.19 -1.7 645,154 - BBR_RS12895 0.19 -1.1 645,179 + BBR_RS12895 0.21 -1.8 645,187 - BBR_RS12895 0.22 -3.2 645,200 + BBR_RS12895 0.23 -1.2 645,224 - BBR_RS12895 0.25 -0.2 645,234 + BBR_RS12895 0.26 -0.3 645,252 - BBR_RS12895 0.28 -0.6 645,277 + BBR_RS12895 0.30 -1.2 645,279 - BBR_RS12895 0.30 -1.7 645,285 - BBR_RS12895 0.31 -0.9 645,285 - BBR_RS12895 0.31 -2.2 645,285 - BBR_RS12895 0.31 -1.1 645,289 + BBR_RS12895 0.31 -1.9 645,295 + BBR_RS12895 0.32 -0.5 645,314 + BBR_RS12895 0.33 -1.3 645,320 - BBR_RS12895 0.34 -1.7 645,320 - BBR_RS12895 0.34 -2.0 645,326 + BBR_RS12895 0.34 -1.4 645,334 - BBR_RS12895 0.35 -1.0 645,334 - BBR_RS12895 0.35 -2.1 645,334 - BBR_RS12895 0.35 -1.7 645,345 - BBR_RS12895 0.36 -1.4 645,345 - BBR_RS12895 0.36 +0.7 645,347 + BBR_RS12895 0.36 -2.2 645,355 - BBR_RS12895 0.37 -1.1 645,357 + BBR_RS12895 0.37 -0.6 645,357 + BBR_RS12895 0.37 -1.4 645,385 - BBR_RS12895 0.39 -1.6 645,411 - BBR_RS12895 0.42 -0.6 645,444 - BBR_RS12895 0.44 -0.6 645,512 + BBR_RS12895 0.50 -0.7 645,539 + BBR_RS12895 0.53 -1.1 645,596 + BBR_RS12895 0.58 -1.0 645,604 - BBR_RS12895 0.58 -1.9 645,609 - BBR_RS12895 0.59 -0.6 645,609 - BBR_RS12895 0.59 -2.0 645,646 + BBR_RS12895 0.62 +1.6 645,698 + BBR_RS12895 0.66 -1.4 645,706 - BBR_RS12895 0.67 -1.5 645,715 + BBR_RS12895 0.68 -1.8 645,723 - BBR_RS12895 0.69 -2.1 645,726 + BBR_RS12895 0.69 +0.0 645,734 - BBR_RS12895 0.70 -0.8 645,770 - BBR_RS12895 0.73 +2.0 645,875 + BBR_RS12895 0.82 +0.2 645,875 + BBR_RS12895 0.82 -0.9 645,875 + BBR_RS12895 0.82 +0.6 645,883 - BBR_RS12895 0.83 -1.5 645,883 - BBR_RS12895 0.83 -0.6 645,883 - BBR_RS12895 0.83 +2.0 645,883 - BBR_RS12895 0.83 -3.7 645,885 - BBR_RS12895 0.83 -1.6 645,907 - BBR_RS12895 0.85 -1.7 645,911 + BBR_RS12895 0.85 -1.1 645,914 - BBR_RS12895 0.85 -3.9 645,927 - BBR_RS12895 0.86 +0.1 646,013 - -1.6 646,026 + -1.2 646,034 - -2.3 646,034 - +1.7 646,090 - -1.6 646,111 + +1.2 646,173 - +3.3 646,173 - +0.3 646,177 - +0.2 646,219 - +1.1 646,234 + -0.9 646,308 - -0.7 646,308 - -0.3 646,592 - BBR_RS12900 0.25 +0.1 646,962 + BBR_RS12900 0.71 -0.7 647,041 + BBR_RS12900 0.81 -1.9 647,049 + BBR_RS12900 0.82 -1.4
Or see this region's nucleotide sequence