Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12570 and BBR_RS12575 are separated by 138 nucleotides BBR_RS12575 and BBR_RS12580 overlap by 2 nucleotides BBR_RS12580 and BBR_RS12585 are separated by 251 nucleotides
BBR_RS12570: BBR_RS12570 - IS21 family transposase, at 577,691 to 579,172
_RS12570
BBR_RS12575: BBR_RS12575 - hypothetical protein, at 579,311 to 579,520
_RS12575
BBR_RS12580: BBR_RS12580 - transposase, at 579,519 to 579,745
_RS12580
BBR_RS12585: BBR_RS12585 - O-unit flippase, at 579,997 to 581,460
_RS12585
Position (kb) 579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 579.339 kb on + strand, within BBR_RS12575 at 579.373 kb on - strand, within BBR_RS12575 at 579.375 kb on + strand, within BBR_RS12575 at 579.461 kb on + strand, within BBR_RS12575 at 579.469 kb on - strand, within BBR_RS12575 at 579.470 kb on - strand, within BBR_RS12575 at 579.470 kb on - strand, within BBR_RS12575 at 579.499 kb on + strand, within BBR_RS12575 at 579.507 kb on - strand at 579.516 kb on - strand at 579.522 kb on + strand at 579.526 kb on + strand at 579.527 kb on + strand at 579.527 kb on + strand at 579.527 kb on + strand at 579.530 kb on - strand at 579.534 kb on - strand at 579.534 kb on - strand at 579.534 kb on - strand at 579.535 kb on - strand at 579.535 kb on - strand at 579.535 kb on - strand at 579.542 kb on + strand, within BBR_RS12580 at 579.552 kb on - strand, within BBR_RS12580 at 579.557 kb on + strand, within BBR_RS12580 at 579.557 kb on + strand, within BBR_RS12580 at 579.565 kb on + strand, within BBR_RS12580 at 579.579 kb on + strand, within BBR_RS12580 at 579.582 kb on + strand, within BBR_RS12580 at 579.592 kb on - strand, within BBR_RS12580 at 579.613 kb on - strand, within BBR_RS12580 at 579.641 kb on + strand, within BBR_RS12580 at 579.641 kb on + strand, within BBR_RS12580 at 579.654 kb on + strand, within BBR_RS12580 at 579.665 kb on + strand, within BBR_RS12580 at 579.672 kb on + strand, within BBR_RS12580 at 579.701 kb on - strand, within BBR_RS12580 at 579.719 kb on + strand, within BBR_RS12580 at 579.724 kb on + strand at 579.747 kb on - strand at 579.754 kb on - strand at 579.791 kb on + strand at 579.791 kb on + strand at 579.792 kb on + strand at 579.797 kb on - strand at 579.799 kb on - strand at 579.800 kb on - strand at 579.800 kb on - strand at 579.839 kb on + strand at 579.839 kb on + strand at 579.839 kb on + strand at 579.839 kb on + strand at 579.839 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.847 kb on - strand at 579.884 kb on + strand at 579.892 kb on - strand at 579.897 kb on - strand at 579.897 kb on - strand at 579.957 kb on + strand at 579.959 kb on + strand at 579.959 kb on + strand at 579.959 kb on + strand at 579.967 kb on - strand at 579.967 kb on - strand at 580.060 kb on + strand at 580.068 kb on - strand at 580.068 kb on - strand at 580.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 579,339 + BBR_RS12575 0.13 -3.0 579,373 - BBR_RS12575 0.30 +0.2 579,375 + BBR_RS12575 0.30 -2.4 579,461 + BBR_RS12575 0.71 -1.3 579,469 - BBR_RS12575 0.75 -2.2 579,470 - BBR_RS12575 0.76 +1.0 579,470 - BBR_RS12575 0.76 +2.4 579,499 + BBR_RS12575 0.90 -1.2 579,507 - -0.5 579,516 - -0.8 579,522 + +2.3 579,526 + -0.1 579,527 + -1.3 579,527 + +0.2 579,527 + -1.0 579,530 - +0.2 579,534 - +4.1 579,534 - +0.6 579,534 - +4.5 579,535 - -2.0 579,535 - +0.5 579,535 - -1.5 579,542 + BBR_RS12580 0.10 -1.5 579,552 - BBR_RS12580 0.15 -1.3 579,557 + BBR_RS12580 0.17 -0.2 579,557 + BBR_RS12580 0.17 -0.6 579,565 + BBR_RS12580 0.20 -1.3 579,579 + BBR_RS12580 0.26 -0.4 579,582 + BBR_RS12580 0.28 +1.0 579,592 - BBR_RS12580 0.32 +0.6 579,613 - BBR_RS12580 0.41 -1.3 579,641 + BBR_RS12580 0.54 +1.4 579,641 + BBR_RS12580 0.54 -1.8 579,654 + BBR_RS12580 0.59 -2.9 579,665 + BBR_RS12580 0.64 -1.3 579,672 + BBR_RS12580 0.67 -1.7 579,701 - BBR_RS12580 0.80 -2.4 579,719 + BBR_RS12580 0.88 -1.3 579,724 + +0.1 579,747 - -1.1 579,754 - -1.1 579,791 + -1.9 579,791 + +1.5 579,792 + -1.2 579,797 - -0.1 579,799 - +3.0 579,800 - +0.3 579,800 - -0.8 579,839 + -0.8 579,839 + -0.7 579,839 + +2.0 579,839 + +0.3 579,839 - -0.9 579,847 - -0.3 579,847 - -2.0 579,847 - +2.3 579,847 - -1.1 579,847 - -1.7 579,847 - +1.2 579,847 - -2.1 579,847 - -0.8 579,884 + +3.7 579,892 - +1.1 579,897 - -2.1 579,897 - -0.3 579,957 + -0.4 579,959 + -0.4 579,959 + -1.0 579,959 + -2.3 579,967 - +0.6 579,967 - -1.5 580,060 + -1.7 580,068 - -2.0 580,068 - -1.3 580,068 - -1.6
Or see this region's nucleotide sequence