Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12325

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12320 and BBR_RS12325 are separated by 210 nucleotidesBBR_RS12325 and BBR_RS12330 are separated by 234 nucleotides BBR_RS12320: BBR_RS12320 - cysteine--tRNA ligase, at 515,408 to 517,057 _RS12320 BBR_RS12325: BBR_RS12325 - type 1 glutamine amidotransferase, at 517,268 to 517,996 _RS12325 BBR_RS12330: BBR_RS12330 - ABC transporter ATP-binding protein, at 518,231 to 520,444 _RS12330 Position (kb) 517 518Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 517.070 kb on - strandat 517.081 kb on - strandat 517.086 kb on + strandat 517.094 kb on - strandat 517.094 kb on - strandat 517.094 kb on - strandat 517.094 kb on - strandat 517.124 kb on + strandat 517.134 kb on - strandat 517.142 kb on - strandat 517.142 kb on - strandat 517.142 kb on - strandat 517.142 kb on - strandat 517.156 kb on + strandat 517.165 kb on - strandat 517.234 kb on - strandat 517.255 kb on + strandat 517.265 kb on - strandat 517.275 kb on + strandat 517.300 kb on + strandat 517.300 kb on + strandat 517.399 kb on + strand, within BBR_RS12325at 517.415 kb on - strand, within BBR_RS12325at 517.429 kb on + strand, within BBR_RS12325at 517.429 kb on + strand, within BBR_RS12325at 517.437 kb on - strand, within BBR_RS12325at 517.475 kb on + strand, within BBR_RS12325at 517.508 kb on + strand, within BBR_RS12325at 517.508 kb on + strand, within BBR_RS12325at 517.585 kb on + strand, within BBR_RS12325at 517.585 kb on + strand, within BBR_RS12325at 517.585 kb on + strand, within BBR_RS12325at 517.642 kb on - strand, within BBR_RS12325at 517.646 kb on - strand, within BBR_RS12325at 517.708 kb on + strand, within BBR_RS12325at 517.712 kb on - strand, within BBR_RS12325at 517.758 kb on - strand, within BBR_RS12325at 517.758 kb on - strand, within BBR_RS12325at 517.768 kb on + strand, within BBR_RS12325at 517.770 kb on + strand, within BBR_RS12325at 517.802 kb on - strand, within BBR_RS12325at 517.804 kb on + strand, within BBR_RS12325at 517.804 kb on + strand, within BBR_RS12325at 517.804 kb on + strand, within BBR_RS12325at 517.863 kb on - strand, within BBR_RS12325at 517.863 kb on - strand, within BBR_RS12325at 517.873 kb on + strand, within BBR_RS12325at 517.974 kb on + strandat 517.987 kb on + strandat 518.052 kb on + strandat 518.131 kb on - strandat 518.147 kb on - strandat 518.165 kb on + strandat 518.185 kb on + strandat 518.200 kb on - strandat 518.200 kb on - strandat 518.202 kb on + strandat 518.202 kb on + strandat 518.202 kb on + strandat 518.202 kb on + strandat 518.208 kb on + strandat 518.218 kb on + strandat 518.218 kb on + strandat 518.223 kb on + strandat 518.312 kb on + strandat 518.322 kb on - strandat 518.391 kb on + strandat 518.402 kb on + strandat 518.410 kb on - strandat 518.410 kb on - strandat 518.412 kb on + strandat 518.412 kb on + strandat 518.414 kb on + strandat 518.424 kb on + strandat 518.434 kb on + strandat 518.445 kb on + strandat 518.473 kb on - strand, within BBR_RS12330at 518.513 kb on + strand, within BBR_RS12330at 518.513 kb on + strand, within BBR_RS12330at 518.538 kb on - strand, within BBR_RS12330at 518.538 kb on - strand, within BBR_RS12330at 518.552 kb on + strand, within BBR_RS12330at 518.561 kb on - strand, within BBR_RS12330at 518.563 kb on + strand, within BBR_RS12330at 518.577 kb on + strand, within BBR_RS12330at 518.584 kb on + strand, within BBR_RS12330at 518.584 kb on - strand, within BBR_RS12330at 518.688 kb on + strand, within BBR_RS12330at 518.688 kb on + strand, within BBR_RS12330at 518.688 kb on + strand, within BBR_RS12330at 518.696 kb on - strand, within BBR_RS12330at 518.706 kb on - strand, within BBR_RS12330at 518.708 kb on - strand, within BBR_RS12330at 518.711 kb on - strand, within BBR_RS12330at 518.720 kb on - strand, within BBR_RS12330at 518.725 kb on + strand, within BBR_RS12330at 518.726 kb on + strand, within BBR_RS12330at 518.740 kb on + strand, within BBR_RS12330at 518.740 kb on + strand, within BBR_RS12330at 518.747 kb on + strand, within BBR_RS12330at 518.747 kb on + strand, within BBR_RS12330at 518.747 kb on + strand, within BBR_RS12330at 518.747 kb on - strand, within BBR_RS12330at 518.748 kb on - strand, within BBR_RS12330at 518.755 kb on - strand, within BBR_RS12330at 518.755 kb on - strand, within BBR_RS12330at 518.771 kb on + strand, within BBR_RS12330at 518.771 kb on + strand, within BBR_RS12330at 518.779 kb on - strand, within BBR_RS12330at 518.808 kb on + strand, within BBR_RS12330at 518.819 kb on + strand, within BBR_RS12330at 518.819 kb on + strand, within BBR_RS12330at 518.827 kb on - strand, within BBR_RS12330at 518.870 kb on - strand, within BBR_RS12330at 518.925 kb on + strand, within BBR_RS12330at 518.925 kb on + strand, within BBR_RS12330at 518.927 kb on - strand, within BBR_RS12330at 518.945 kb on + strand, within BBR_RS12330at 518.945 kb on + strand, within BBR_RS12330

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
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517,070 - +0.8
517,081 - -2.9
517,086 + +3.1
517,094 - +2.1
517,094 - -1.3
517,094 - +0.6
517,094 - +0.5
517,124 + +0.8
517,134 - -0.3
517,142 - +0.5
517,142 - -1.2
517,142 - +2.8
517,142 - -2.7
517,156 + +1.8
517,165 - +2.9
517,234 - -0.8
517,255 + -0.2
517,265 - -0.3
517,275 + +0.2
517,300 + -0.4
517,300 + -3.1
517,399 + BBR_RS12325 0.18 +0.6
517,415 - BBR_RS12325 0.20 -1.9
517,429 + BBR_RS12325 0.22 +1.3
517,429 + BBR_RS12325 0.22 -1.9
517,437 - BBR_RS12325 0.23 -0.8
517,475 + BBR_RS12325 0.28 +1.1
517,508 + BBR_RS12325 0.33 -0.2
517,508 + BBR_RS12325 0.33 +1.9
517,585 + BBR_RS12325 0.43 -0.5
517,585 + BBR_RS12325 0.43 -0.3
517,585 + BBR_RS12325 0.43 -0.9
517,642 - BBR_RS12325 0.51 +0.3
517,646 - BBR_RS12325 0.52 +1.8
517,708 + BBR_RS12325 0.60 -1.3
517,712 - BBR_RS12325 0.61 +3.0
517,758 - BBR_RS12325 0.67 +2.9
517,758 - BBR_RS12325 0.67 +1.8
517,768 + BBR_RS12325 0.69 +3.4
517,770 + BBR_RS12325 0.69 +1.4
517,802 - BBR_RS12325 0.73 +3.9
517,804 + BBR_RS12325 0.74 +1.9
517,804 + BBR_RS12325 0.74 -1.7
517,804 + BBR_RS12325 0.74 +0.5
517,863 - BBR_RS12325 0.82 -1.4
517,863 - BBR_RS12325 0.82 +0.6
517,873 + BBR_RS12325 0.83 +0.5
517,974 + -0.7
517,987 + +0.3
518,052 + -1.1
518,131 - -0.8
518,147 - +2.0
518,165 + +0.6
518,185 + -0.9
518,200 - +0.1
518,200 - -0.6
518,202 + +0.3
518,202 + -2.0
518,202 + +0.5
518,202 + +1.8
518,208 + -1.2
518,218 + -1.4
518,218 + -0.7
518,223 + +0.9
518,312 + +0.6
518,322 - +3.0
518,391 + -2.0
518,402 + -0.4
518,410 - +1.9
518,410 - +2.0
518,412 + +2.4
518,412 + -0.8
518,414 + -0.2
518,424 + +0.1
518,434 + -0.6
518,445 + +0.9
518,473 - BBR_RS12330 0.11 -2.3
518,513 + BBR_RS12330 0.13 -0.5
518,513 + BBR_RS12330 0.13 +1.1
518,538 - BBR_RS12330 0.14 +0.3
518,538 - BBR_RS12330 0.14 -1.6
518,552 + BBR_RS12330 0.14 -0.4
518,561 - BBR_RS12330 0.15 -2.2
518,563 + BBR_RS12330 0.15 +2.0
518,577 + BBR_RS12330 0.16 -2.4
518,584 + BBR_RS12330 0.16 +2.0
518,584 - BBR_RS12330 0.16 +1.2
518,688 + BBR_RS12330 0.21 +0.1
518,688 + BBR_RS12330 0.21 -1.5
518,688 + BBR_RS12330 0.21 +0.7
518,696 - BBR_RS12330 0.21 +2.0
518,706 - BBR_RS12330 0.21 +2.7
518,708 - BBR_RS12330 0.22 -0.6
518,711 - BBR_RS12330 0.22 +1.1
518,720 - BBR_RS12330 0.22 +0.5
518,725 + BBR_RS12330 0.22 -1.1
518,726 + BBR_RS12330 0.22 +1.0
518,740 + BBR_RS12330 0.23 -0.4
518,740 + BBR_RS12330 0.23 -0.7
518,747 + BBR_RS12330 0.23 +0.9
518,747 + BBR_RS12330 0.23 -0.3
518,747 + BBR_RS12330 0.23 -2.0
518,747 - BBR_RS12330 0.23 -0.6
518,748 - BBR_RS12330 0.23 +3.3
518,755 - BBR_RS12330 0.24 +0.1
518,755 - BBR_RS12330 0.24 -0.4
518,771 + BBR_RS12330 0.24 +2.8
518,771 + BBR_RS12330 0.24 +3.2
518,779 - BBR_RS12330 0.25 +1.4
518,808 + BBR_RS12330 0.26 -1.2
518,819 + BBR_RS12330 0.27 +0.1
518,819 + BBR_RS12330 0.27 +1.7
518,827 - BBR_RS12330 0.27 -0.9
518,870 - BBR_RS12330 0.29 -1.3
518,925 + BBR_RS12330 0.31 -1.2
518,925 + BBR_RS12330 0.31 +0.1
518,927 - BBR_RS12330 0.31 +0.1
518,945 + BBR_RS12330 0.32 -2.3
518,945 + BBR_RS12330 0.32 +1.4

Or see this region's nucleotide sequence