Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11535 and BBR_RS11540 are separated by 2 nucleotides BBR_RS11540 and BBR_RS11545 are separated by 109 nucleotides
BBR_RS11535: BBR_RS11535 - replicative DNA helicase, at 346,378 to 347,838
_RS11535
BBR_RS11540: BBR_RS11540 - DUF1727 domain-containing protein, at 347,841 to 349,268
_RS11540
BBR_RS11545: BBR_RS11545 - glutamine amidotransferase, at 349,378 to 350,130
_RS11545
Position (kb) 347
348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 348.479 kb on + strand, within BBR_RS11540 at 348.485 kb on + strand, within BBR_RS11540 at 348.581 kb on + strand, within BBR_RS11540 at 348.581 kb on + strand, within BBR_RS11540 at 348.587 kb on + strand, within BBR_RS11540 at 349.219 kb on - strand at 349.221 kb on + strand at 349.221 kb on + strand at 349.221 kb on + strand at 349.221 kb on + strand at 349.221 kb on + strand at 349.221 kb on + strand at 349.229 kb on - strand at 349.229 kb on - strand at 349.262 kb on + strand at 349.262 kb on + strand at 349.272 kb on - strand at 349.272 kb on - strand at 349.277 kb on - strand at 349.277 kb on - strand at 349.308 kb on + strand at 349.317 kb on - strand at 349.335 kb on + strand at 349.340 kb on + strand at 349.348 kb on - strand at 349.365 kb on + strand at 349.372 kb on + strand at 350.108 kb on - strand at 350.108 kb on - strand at 350.131 kb on + strand at 350.142 kb on + strand at 350.143 kb on + strand at 350.148 kb on + strand at 350.150 kb on - strand at 350.151 kb on - strand at 350.153 kb on + strand at 350.153 kb on + strand at 350.153 kb on + strand at 350.153 kb on + strand at 350.161 kb on - strand at 350.161 kb on - strand at 350.161 kb on - strand at 350.161 kb on - strand at 350.192 kb on + strand at 350.197 kb on + strand at 350.199 kb on + strand at 350.216 kb on + strand at 350.221 kb on + strand at 350.229 kb on - strand at 350.236 kb on + strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 348,479 + BBR_RS11540 0.45 -0.1 348,485 + BBR_RS11540 0.45 -2.4 348,581 + BBR_RS11540 0.52 -0.6 348,581 + BBR_RS11540 0.52 -1.1 348,587 + BBR_RS11540 0.52 -1.9 349,219 - +1.6 349,221 + +2.2 349,221 + -0.3 349,221 + +1.1 349,221 + -0.5 349,221 + -0.9 349,221 + +3.4 349,229 - -0.7 349,229 - +0.2 349,262 + +1.5 349,262 + +2.1 349,272 - -0.5 349,272 - -1.7 349,277 - -0.6 349,277 - -0.5 349,308 + +1.7 349,317 - +0.3 349,335 + +0.6 349,340 + +0.2 349,348 - +0.5 349,365 + -1.9 349,372 + +1.5 350,108 - +1.4 350,108 - +3.2 350,131 + -1.1 350,142 + +0.5 350,143 + +0.6 350,148 + +0.3 350,150 - +1.8 350,151 - -1.2 350,153 + +1.2 350,153 + -2.0 350,153 + -1.4 350,153 + -1.1 350,161 - +3.4 350,161 - +1.5 350,161 - +0.5 350,161 - -1.9 350,192 + +0.9 350,197 + -0.5 350,199 + +0.2 350,216 + -0.7 350,221 + +0.4 350,229 - -1.9 350,236 + -1.0 350,239 - -1.4 350,239 - +4.0 350,261 + -2.3
Or see this region's nucleotide sequence