Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11175 and BBR_RS11180 are separated by 383 nucleotides BBR_RS11180 and BBR_RS11185 are separated by 103 nucleotides
BBR_RS11175: BBR_RS11175 - penicillin-binding protein, at 248,656 to 251,010
_RS11175
BBR_RS11180: BBR_RS11180 - phosphatase PAP2 family protein, at 251,394 to 252,572
_RS11180
BBR_RS11185: BBR_RS11185 - type I DNA topoisomerase, at 252,676 to 255,726
_RS11185
Position (kb) 251
252
253 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 250.402 kb on + strand, within BBR_RS11175 at 250.410 kb on - strand, within BBR_RS11175 at 250.413 kb on + strand, within BBR_RS11175 at 250.441 kb on - strand, within BBR_RS11175 at 250.441 kb on - strand, within BBR_RS11175 at 250.441 kb on - strand, within BBR_RS11175 at 250.441 kb on - strand, within BBR_RS11175 at 250.453 kb on + strand, within BBR_RS11175 at 250.453 kb on + strand, within BBR_RS11175 at 250.455 kb on + strand, within BBR_RS11175 at 250.461 kb on - strand, within BBR_RS11175 at 250.465 kb on + strand, within BBR_RS11175 at 250.501 kb on + strand, within BBR_RS11175 at 250.501 kb on + strand, within BBR_RS11175 at 250.501 kb on + strand, within BBR_RS11175 at 250.516 kb on + strand, within BBR_RS11175 at 250.524 kb on - strand, within BBR_RS11175 at 250.524 kb on - strand, within BBR_RS11175 at 250.547 kb on + strand, within BBR_RS11175 at 250.547 kb on + strand, within BBR_RS11175 at 250.547 kb on + strand, within BBR_RS11175 at 250.555 kb on - strand, within BBR_RS11175 at 250.555 kb on - strand, within BBR_RS11175 at 250.647 kb on - strand, within BBR_RS11175 at 250.667 kb on + strand, within BBR_RS11175 at 250.675 kb on - strand, within BBR_RS11175 at 250.727 kb on + strand, within BBR_RS11175 at 250.727 kb on + strand, within BBR_RS11175 at 250.730 kb on + strand, within BBR_RS11175 at 250.738 kb on - strand, within BBR_RS11175 at 250.772 kb on + strand, within BBR_RS11175 at 250.790 kb on - strand at 250.807 kb on + strand at 250.807 kb on + strand at 250.808 kb on - strand at 250.856 kb on + strand at 250.856 kb on + strand at 250.856 kb on + strand at 250.864 kb on - strand at 250.864 kb on - strand at 250.870 kb on - strand at 250.877 kb on + strand at 250.931 kb on + strand at 250.931 kb on + strand at 250.939 kb on - strand at 250.939 kb on - strand at 250.939 kb on - strand at 250.939 kb on - strand at 250.939 kb on - strand at 250.949 kb on - strand at 250.960 kb on - strand at 250.960 kb on - strand at 250.960 kb on - strand at 250.967 kb on + strand at 250.969 kb on + strand at 250.979 kb on + strand at 250.986 kb on + strand at 251.016 kb on + strand at 251.042 kb on + strand at 251.050 kb on - strand at 251.057 kb on + strand at 251.057 kb on + strand at 251.057 kb on - strand at 251.057 kb on - strand at 251.064 kb on + strand at 251.067 kb on - strand at 251.067 kb on - strand at 251.072 kb on - strand at 251.078 kb on - strand at 251.119 kb on - strand at 251.136 kb on - strand at 251.142 kb on + strand at 251.162 kb on - strand at 251.339 kb on - strand at 251.365 kb on + strand at 251.365 kb on + strand at 251.365 kb on + strand at 251.365 kb on + strand at 251.373 kb on - strand at 251.373 kb on - strand at 251.373 kb on - strand at 251.373 kb on - strand at 251.377 kb on + strand at 251.377 kb on + strand at 251.377 kb on + strand at 251.385 kb on + strand at 251.385 kb on + strand at 251.385 kb on - strand at 251.420 kb on - strand at 251.438 kb on + strand at 251.443 kb on + strand at 251.443 kb on + strand at 251.446 kb on - strand at 251.446 kb on - strand at 251.447 kb on + strand at 251.447 kb on + strand at 251.447 kb on + strand at 251.451 kb on - strand at 251.466 kb on - strand at 251.495 kb on + strand at 251.516 kb on + strand, within BBR_RS11180 at 251.516 kb on + strand, within BBR_RS11180 at 251.521 kb on + strand, within BBR_RS11180 at 251.539 kb on + strand, within BBR_RS11180 at 251.547 kb on - strand, within BBR_RS11180 at 251.556 kb on - strand, within BBR_RS11180 at 251.574 kb on - strand, within BBR_RS11180 at 251.599 kb on + strand, within BBR_RS11180 at 251.604 kb on + strand, within BBR_RS11180 at 251.604 kb on + strand, within BBR_RS11180 at 251.607 kb on + strand, within BBR_RS11180 at 251.618 kb on + strand, within BBR_RS11180 at 251.638 kb on + strand, within BBR_RS11180 at 251.638 kb on + strand, within BBR_RS11180 at 251.638 kb on + strand, within BBR_RS11180 at 251.638 kb on + strand, within BBR_RS11180 at 251.644 kb on + strand, within BBR_RS11180 at 251.646 kb on + strand, within BBR_RS11180 at 251.646 kb on - strand, within BBR_RS11180 at 251.646 kb on - strand, within BBR_RS11180 at 251.646 kb on - strand, within BBR_RS11180 at 251.646 kb on - strand, within BBR_RS11180 at 251.646 kb on - strand, within BBR_RS11180 at 251.646 kb on - strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.648 kb on + strand, within BBR_RS11180 at 251.653 kb on + strand, within BBR_RS11180 at 251.653 kb on + strand, within BBR_RS11180 at 251.653 kb on + strand, within BBR_RS11180 at 251.653 kb on + strand, within BBR_RS11180 at 251.654 kb on + strand, within BBR_RS11180 at 251.656 kb on - strand, within BBR_RS11180 at 251.656 kb on - strand, within BBR_RS11180 at 251.656 kb on - strand, within BBR_RS11180 at 251.656 kb on - strand, within BBR_RS11180 at 251.656 kb on - strand, within BBR_RS11180 at 251.661 kb on - strand, within BBR_RS11180 at 251.661 kb on - strand, within BBR_RS11180 at 251.689 kb on + strand, within BBR_RS11180 at 251.689 kb on + strand, within BBR_RS11180 at 251.691 kb on + strand, within BBR_RS11180 at 251.692 kb on - strand, within BBR_RS11180 at 251.697 kb on - strand, within BBR_RS11180 at 251.728 kb on - strand, within BBR_RS11180 at 251.743 kb on + strand, within BBR_RS11180 at 251.751 kb on - strand, within BBR_RS11180 at 251.751 kb on - strand, within BBR_RS11180 at 251.783 kb on + strand, within BBR_RS11180 at 251.805 kb on - strand, within BBR_RS11180 at 251.844 kb on - strand, within BBR_RS11180 at 251.856 kb on + strand, within BBR_RS11180 at 251.874 kb on + strand, within BBR_RS11180 at 251.874 kb on + strand, within BBR_RS11180 at 251.919 kb on + strand, within BBR_RS11180 at 251.938 kb on + strand, within BBR_RS11180 at 251.943 kb on - strand, within BBR_RS11180 at 251.943 kb on - strand, within BBR_RS11180 at 251.969 kb on - strand, within BBR_RS11180 at 251.969 kb on - strand, within BBR_RS11180 at 251.974 kb on - strand, within BBR_RS11180 at 251.987 kb on + strand, within BBR_RS11180 at 251.987 kb on + strand, within BBR_RS11180 at 251.987 kb on + strand, within BBR_RS11180 at 251.995 kb on - strand, within BBR_RS11180 at 251.995 kb on - strand, within BBR_RS11180 at 251.995 kb on - strand, within BBR_RS11180 at 251.995 kb on - strand, within BBR_RS11180 at 251.995 kb on - strand, within BBR_RS11180 at 251.995 kb on - strand, within BBR_RS11180 at 251.997 kb on + strand, within BBR_RS11180 at 252.017 kb on + strand, within BBR_RS11180 at 252.025 kb on - strand, within BBR_RS11180 at 252.025 kb on - strand, within BBR_RS11180 at 252.025 kb on - strand, within BBR_RS11180 at 252.039 kb on + strand, within BBR_RS11180 at 252.057 kb on + strand, within BBR_RS11180 at 252.057 kb on + strand, within BBR_RS11180 at 252.066 kb on + strand, within BBR_RS11180 at 252.070 kb on - strand, within BBR_RS11180 at 252.074 kb on - strand, within BBR_RS11180 at 252.082 kb on + strand, within BBR_RS11180 at 252.107 kb on + strand, within BBR_RS11180 at 252.109 kb on + strand, within BBR_RS11180 at 252.109 kb on + strand, within BBR_RS11180 at 252.152 kb on + strand, within BBR_RS11180 at 252.160 kb on - strand, within BBR_RS11180 at 252.160 kb on - strand, within BBR_RS11180 at 252.160 kb on - strand, within BBR_RS11180 at 252.205 kb on - strand, within BBR_RS11180 at 252.212 kb on + strand, within BBR_RS11180 at 252.214 kb on + strand, within BBR_RS11180 at 252.222 kb on - strand, within BBR_RS11180 at 252.222 kb on - strand, within BBR_RS11180 at 252.222 kb on - strand, within BBR_RS11180 at 252.222 kb on - strand, within BBR_RS11180 at 252.224 kb on + strand, within BBR_RS11180 at 252.234 kb on + strand, within BBR_RS11180 at 252.235 kb on + strand, within BBR_RS11180 at 252.235 kb on + strand, within BBR_RS11180 at 252.243 kb on - strand, within BBR_RS11180 at 252.255 kb on + strand, within BBR_RS11180 at 252.273 kb on + strand, within BBR_RS11180 at 252.274 kb on + strand, within BBR_RS11180 at 252.280 kb on - strand, within BBR_RS11180 at 252.286 kb on - strand, within BBR_RS11180 at 252.287 kb on - strand, within BBR_RS11180 at 252.292 kb on + strand, within BBR_RS11180 at 252.296 kb on + strand, within BBR_RS11180 at 252.298 kb on + strand, within BBR_RS11180 at 252.304 kb on - strand, within BBR_RS11180 at 252.330 kb on + strand, within BBR_RS11180 at 252.330 kb on + strand, within BBR_RS11180 at 252.336 kb on - strand, within BBR_RS11180 at 252.346 kb on + strand, within BBR_RS11180 at 252.356 kb on - strand, within BBR_RS11180 at 252.358 kb on - strand, within BBR_RS11180 at 252.375 kb on - strand, within BBR_RS11180 at 252.375 kb on - strand, within BBR_RS11180 at 252.384 kb on - strand, within BBR_RS11180 at 252.431 kb on - strand, within BBR_RS11180 at 252.432 kb on + strand, within BBR_RS11180 at 252.433 kb on - strand, within BBR_RS11180 at 252.433 kb on - strand, within BBR_RS11180 at 252.447 kb on + strand, within BBR_RS11180 at 252.457 kb on + strand at 252.478 kb on + strand at 252.478 kb on + strand at 252.478 kb on + strand at 252.486 kb on - strand at 252.486 kb on - strand at 252.486 kb on - strand at 252.486 kb on - strand at 252.488 kb on + strand at 252.503 kb on + strand at 252.511 kb on - strand at 252.524 kb on + strand at 252.524 kb on + strand at 252.527 kb on - strand at 252.527 kb on - strand at 252.534 kb on + strand at 252.534 kb on + strand at 252.557 kb on - strand at 252.558 kb on + strand at 252.571 kb on + strand at 252.602 kb on - strand at 252.623 kb on - strand at 252.623 kb on - strand at 252.660 kb on + strand at 252.667 kb on + strand at 252.667 kb on + strand at 252.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 250,402 + BBR_RS11175 0.74 +2.4 250,410 - BBR_RS11175 0.74 +0.5 250,413 + BBR_RS11175 0.75 +0.1 250,441 - BBR_RS11175 0.76 +1.4 250,441 - BBR_RS11175 0.76 +1.0 250,441 - BBR_RS11175 0.76 +1.3 250,441 - BBR_RS11175 0.76 -1.1 250,453 + BBR_RS11175 0.76 +1.0 250,453 + BBR_RS11175 0.76 -0.7 250,455 + BBR_RS11175 0.76 -1.3 250,461 - BBR_RS11175 0.77 +1.9 250,465 + BBR_RS11175 0.77 -0.1 250,501 + BBR_RS11175 0.78 -0.1 250,501 + BBR_RS11175 0.78 +4.4 250,501 + BBR_RS11175 0.78 -1.4 250,516 + BBR_RS11175 0.79 -0.6 250,524 - BBR_RS11175 0.79 +0.5 250,524 - BBR_RS11175 0.79 +1.1 250,547 + BBR_RS11175 0.80 +1.1 250,547 + BBR_RS11175 0.80 -0.2 250,547 + BBR_RS11175 0.80 -1.3 250,555 - BBR_RS11175 0.81 +0.9 250,555 - BBR_RS11175 0.81 +1.0 250,647 - BBR_RS11175 0.85 -1.1 250,667 + BBR_RS11175 0.85 -0.6 250,675 - BBR_RS11175 0.86 +0.4 250,727 + BBR_RS11175 0.88 -0.5 250,727 + BBR_RS11175 0.88 +0.3 250,730 + BBR_RS11175 0.88 +0.9 250,738 - BBR_RS11175 0.88 +1.1 250,772 + BBR_RS11175 0.90 -0.5 250,790 - -1.5 250,807 + +2.4 250,807 + +0.8 250,808 - +1.1 250,856 + +0.8 250,856 + -1.0 250,856 + +1.5 250,864 - +0.5 250,864 - -2.1 250,870 - +0.7 250,877 + -1.3 250,931 + +0.9 250,931 + +3.2 250,939 - -1.0 250,939 - +1.1 250,939 - -0.6 250,939 - -0.6 250,939 - +1.9 250,949 - +0.9 250,960 - -0.0 250,960 - +0.5 250,960 - +0.6 250,967 + +0.4 250,969 + -1.6 250,979 + +2.1 250,986 + -0.4 251,016 + -0.0 251,042 + -1.7 251,050 - +1.8 251,057 + -2.5 251,057 + -1.0 251,057 - +0.6 251,057 - +0.9 251,064 + +0.4 251,067 - -0.3 251,067 - -0.4 251,072 - +0.6 251,078 - +0.3 251,119 - +0.4 251,136 - +3.2 251,142 + +2.3 251,162 - +2.1 251,339 - -0.0 251,365 + +2.6 251,365 + -1.7 251,365 + -2.2 251,365 + -0.7 251,373 - -1.6 251,373 - -2.1 251,373 - -1.2 251,373 - +0.5 251,377 + +0.0 251,377 + -0.4 251,377 + -0.3 251,385 + +0.7 251,385 + -1.1 251,385 - -2.1 251,420 - -2.3 251,438 + -3.0 251,443 + -2.8 251,443 + -2.3 251,446 - -1.2 251,446 - +0.1 251,447 + +1.0 251,447 + +2.2 251,447 + +3.0 251,451 - -3.1 251,466 - -1.8 251,495 + -2.4 251,516 + BBR_RS11180 0.10 +0.6 251,516 + BBR_RS11180 0.10 +0.2 251,521 + BBR_RS11180 0.11 -3.8 251,539 + BBR_RS11180 0.12 -1.2 251,547 - BBR_RS11180 0.13 -3.1 251,556 - BBR_RS11180 0.14 +0.7 251,574 - BBR_RS11180 0.15 +1.1 251,599 + BBR_RS11180 0.17 -2.5 251,604 + BBR_RS11180 0.18 -1.4 251,604 + BBR_RS11180 0.18 -0.6 251,607 + BBR_RS11180 0.18 +0.3 251,618 + BBR_RS11180 0.19 +1.9 251,638 + BBR_RS11180 0.21 -1.5 251,638 + BBR_RS11180 0.21 -2.3 251,638 + BBR_RS11180 0.21 -0.6 251,638 + BBR_RS11180 0.21 -0.1 251,644 + BBR_RS11180 0.21 +1.0 251,646 + BBR_RS11180 0.21 -1.5 251,646 - BBR_RS11180 0.21 -2.2 251,646 - BBR_RS11180 0.21 -1.5 251,646 - BBR_RS11180 0.21 -2.0 251,646 - BBR_RS11180 0.21 -0.8 251,646 - BBR_RS11180 0.21 -2.0 251,646 - BBR_RS11180 0.21 -1.7 251,648 + BBR_RS11180 0.22 -2.1 251,648 + BBR_RS11180 0.22 -2.5 251,648 + BBR_RS11180 0.22 -2.0 251,648 + BBR_RS11180 0.22 +2.7 251,648 + BBR_RS11180 0.22 -0.5 251,648 + BBR_RS11180 0.22 +0.3 251,648 + BBR_RS11180 0.22 -0.4 251,653 + BBR_RS11180 0.22 -1.6 251,653 + BBR_RS11180 0.22 -2.1 251,653 + BBR_RS11180 0.22 -1.1 251,653 + BBR_RS11180 0.22 -1.9 251,654 + BBR_RS11180 0.22 -2.6 251,656 - BBR_RS11180 0.22 -0.9 251,656 - BBR_RS11180 0.22 -2.5 251,656 - BBR_RS11180 0.22 -2.3 251,656 - BBR_RS11180 0.22 -0.9 251,656 - BBR_RS11180 0.22 -0.9 251,661 - BBR_RS11180 0.23 -1.1 251,661 - BBR_RS11180 0.23 -1.1 251,689 + BBR_RS11180 0.25 +1.4 251,689 + BBR_RS11180 0.25 -3.1 251,691 + BBR_RS11180 0.25 -2.5 251,692 - BBR_RS11180 0.25 -2.4 251,697 - BBR_RS11180 0.26 -3.2 251,728 - BBR_RS11180 0.28 -1.5 251,743 + BBR_RS11180 0.30 -1.8 251,751 - BBR_RS11180 0.30 -1.8 251,751 - BBR_RS11180 0.30 -1.7 251,783 + BBR_RS11180 0.33 -3.3 251,805 - BBR_RS11180 0.35 -2.1 251,844 - BBR_RS11180 0.38 -1.5 251,856 + BBR_RS11180 0.39 -1.8 251,874 + BBR_RS11180 0.41 -3.4 251,874 + BBR_RS11180 0.41 -2.5 251,919 + BBR_RS11180 0.45 -2.8 251,938 + BBR_RS11180 0.46 -1.7 251,943 - BBR_RS11180 0.47 -0.5 251,943 - BBR_RS11180 0.47 -3.1 251,969 - BBR_RS11180 0.49 -0.3 251,969 - BBR_RS11180 0.49 -3.3 251,974 - BBR_RS11180 0.49 -2.0 251,987 + BBR_RS11180 0.50 -1.4 251,987 + BBR_RS11180 0.50 -2.2 251,987 + BBR_RS11180 0.50 -2.6 251,995 - BBR_RS11180 0.51 -1.5 251,995 - BBR_RS11180 0.51 -3.1 251,995 - BBR_RS11180 0.51 -1.7 251,995 - BBR_RS11180 0.51 -1.4 251,995 - BBR_RS11180 0.51 -1.6 251,995 - BBR_RS11180 0.51 -0.5 251,997 + BBR_RS11180 0.51 -2.2 252,017 + BBR_RS11180 0.53 -2.1 252,025 - BBR_RS11180 0.54 -1.6 252,025 - BBR_RS11180 0.54 -1.6 252,025 - BBR_RS11180 0.54 -0.8 252,039 + BBR_RS11180 0.55 -1.7 252,057 + BBR_RS11180 0.56 -1.9 252,057 + BBR_RS11180 0.56 -2.1 252,066 + BBR_RS11180 0.57 -0.5 252,070 - BBR_RS11180 0.57 -1.3 252,074 - BBR_RS11180 0.58 -1.8 252,082 + BBR_RS11180 0.58 -1.9 252,107 + BBR_RS11180 0.60 -1.7 252,109 + BBR_RS11180 0.61 -2.3 252,109 + BBR_RS11180 0.61 -2.3 252,152 + BBR_RS11180 0.64 -2.2 252,160 - BBR_RS11180 0.65 -1.3 252,160 - BBR_RS11180 0.65 -2.3 252,160 - BBR_RS11180 0.65 +0.7 252,205 - BBR_RS11180 0.69 -2.2 252,212 + BBR_RS11180 0.69 -0.4 252,214 + BBR_RS11180 0.70 -1.9 252,222 - BBR_RS11180 0.70 -1.3 252,222 - BBR_RS11180 0.70 -2.0 252,222 - BBR_RS11180 0.70 -1.0 252,222 - BBR_RS11180 0.70 -0.9 252,224 + BBR_RS11180 0.70 -1.2 252,234 + BBR_RS11180 0.71 -0.9 252,235 + BBR_RS11180 0.71 -2.6 252,235 + BBR_RS11180 0.71 -1.5 252,243 - BBR_RS11180 0.72 -2.1 252,255 + BBR_RS11180 0.73 -1.3 252,273 + BBR_RS11180 0.75 +2.0 252,274 + BBR_RS11180 0.75 -1.2 252,280 - BBR_RS11180 0.75 -2.0 252,286 - BBR_RS11180 0.76 -2.3 252,287 - BBR_RS11180 0.76 -0.6 252,292 + BBR_RS11180 0.76 -2.7 252,296 + BBR_RS11180 0.77 -1.1 252,298 + BBR_RS11180 0.77 -2.6 252,304 - BBR_RS11180 0.77 -2.1 252,330 + BBR_RS11180 0.79 -0.3 252,330 + BBR_RS11180 0.79 -2.7 252,336 - BBR_RS11180 0.80 -1.8 252,346 + BBR_RS11180 0.81 -1.3 252,356 - BBR_RS11180 0.82 +0.2 252,358 - BBR_RS11180 0.82 -0.6 252,375 - BBR_RS11180 0.83 -1.3 252,375 - BBR_RS11180 0.83 -0.8 252,384 - BBR_RS11180 0.84 -1.0 252,431 - BBR_RS11180 0.88 -2.8 252,432 + BBR_RS11180 0.88 -2.2 252,433 - BBR_RS11180 0.88 -1.2 252,433 - BBR_RS11180 0.88 -3.5 252,447 + BBR_RS11180 0.89 -2.1 252,457 + -1.2 252,478 + -2.3 252,478 + -2.2 252,478 + -1.9 252,486 - -3.4 252,486 - -0.2 252,486 - +0.1 252,486 - -0.8 252,488 + -2.3 252,503 + -0.7 252,511 - -2.6 252,524 + -2.1 252,524 + -3.0 252,527 - -2.3 252,527 - -2.1 252,534 + -3.1 252,534 + -1.8 252,557 - +1.5 252,558 + -0.3 252,571 + +0.6 252,602 - +0.3 252,623 - +1.4 252,623 - -3.3 252,660 + +2.3 252,667 + +2.4 252,667 + -0.0 252,667 + +1.6
Or see this region's nucleotide sequence