Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10610 and BBR_RS10615 overlap by 4 nucleotides BBR_RS10615 and BBR_RS10620 overlap by 4 nucleotides
BBR_RS10610: BBR_RS10610 - penicillin-binding protein, at 98,056 to 99,522
_RS10610
BBR_RS10615: BBR_RS10615 - FtsW/RodA/SpoVE family cell cycle protein, at 99,519 to 101,126
_RS10615
BBR_RS10620: BBR_RS10620 - phosphoprotein phosphatase, at 101,123 to 102,742
_RS10620
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 99.525 kb on - strand at 99.540 kb on - strand at 99.554 kb on - strand at 99.584 kb on + strand at 99.584 kb on + strand at 99.588 kb on - strand at 99.588 kb on - strand at 99.592 kb on + strand at 99.610 kb on - strand at 99.612 kb on - strand at 99.624 kb on - strand at 99.626 kb on + strand at 99.626 kb on + strand at 99.630 kb on + strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.638 kb on - strand at 99.650 kb on - strand at 99.661 kb on - strand at 99.661 kb on - strand at 99.671 kb on - strand at 99.697 kb on - strand, within BBR_RS10615 at 99.700 kb on - strand, within BBR_RS10615 at 99.725 kb on - strand, within BBR_RS10615 at 99.725 kb on - strand, within BBR_RS10615 at 99.748 kb on - strand, within BBR_RS10615 at 99.748 kb on - strand, within BBR_RS10615 at 99.769 kb on - strand, within BBR_RS10615 at 99.808 kb on - strand, within BBR_RS10615 at 101.178 kb on + strand at 101.238 kb on - strand at 101.245 kb on - strand at 101.325 kb on - strand, within BBR_RS10620 at 101.325 kb on - strand, within BBR_RS10620 at 101.325 kb on - strand, within BBR_RS10620 at 101.325 kb on - strand, within BBR_RS10620 at 101.412 kb on - strand, within BBR_RS10620 at 101.424 kb on - strand, within BBR_RS10620 at 101.424 kb on - strand, within BBR_RS10620 at 101.439 kb on - strand, within BBR_RS10620 at 101.489 kb on - strand, within BBR_RS10620 at 101.490 kb on - strand, within BBR_RS10620 at 101.491 kb on - strand, within BBR_RS10620 at 101.523 kb on + strand, within BBR_RS10620 at 101.536 kb on - strand, within BBR_RS10620
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 remove 99,525 - -1.4 99,540 - -1.3 99,554 - -1.5 99,584 + -1.0 99,584 + +0.4 99,588 - -2.1 99,588 - -2.1 99,592 + +0.4 99,610 - -1.2 99,612 - -1.1 99,624 - +0.6 99,626 + -0.1 99,626 + -1.3 99,630 + +0.3 99,638 - -2.5 99,638 - -2.0 99,638 - +1.2 99,650 - -2.6 99,661 - -3.2 99,661 - +0.9 99,671 - -1.6 99,697 - BBR_RS10615 0.11 -3.5 99,700 - BBR_RS10615 0.11 -1.6 99,725 - BBR_RS10615 0.13 +0.5 99,725 - BBR_RS10615 0.13 -1.6 99,748 - BBR_RS10615 0.14 -3.0 99,748 - BBR_RS10615 0.14 -3.4 99,769 - BBR_RS10615 0.16 -1.7 99,808 - BBR_RS10615 0.18 -1.8 101,178 + -1.3 101,238 - -1.2 101,245 - -0.0 101,325 - BBR_RS10620 0.12 -0.4 101,325 - BBR_RS10620 0.12 -0.8 101,325 - BBR_RS10620 0.12 -0.4 101,325 - BBR_RS10620 0.12 -0.6 101,412 - BBR_RS10620 0.18 -2.0 101,424 - BBR_RS10620 0.19 -2.1 101,424 - BBR_RS10620 0.19 -2.6 101,439 - BBR_RS10620 0.20 -1.2 101,489 - BBR_RS10620 0.23 +1.2 101,490 - BBR_RS10620 0.23 -0.4 101,491 - BBR_RS10620 0.23 +2.7 101,523 + BBR_RS10620 0.25 +4.7 101,536 - BBR_RS10620 0.25 -0.4
Or see this region's nucleotide sequence