Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10570

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
89,072	+		BBR_RS10565	0.72	-2.3
89,082	+		BBR_RS10565	0.72	-2.1
89,088	-		BBR_RS10565	0.73	-3.4
89,122	-		BBR_RS10565	0.74	-2.2
89,127	-		BBR_RS10565	0.74	-4.4
89,127	-		BBR_RS10565	0.74	+2.6
89,155	+		BBR_RS10565	0.75	-2.3
89,174	+		BBR_RS10565	0.76	-2.5
89,210	-		BBR_RS10565	0.78	-1.9
89,220	+		BBR_RS10565	0.78	-2.6
89,220	+		BBR_RS10565	0.78	-0.3
89,223	-		BBR_RS10565	0.78	-2.0
89,223	-		BBR_RS10565	0.78	-2.9
89,227	+		BBR_RS10565	0.78	-3.0
89,227	+		BBR_RS10565	0.78	-2.1
89,228	-		BBR_RS10565	0.78	-1.3
89,228	-		BBR_RS10565	0.78	-2.6
89,236	-		BBR_RS10565	0.79	-0.6
89,269	-		BBR_RS10565	0.80	-2.5
89,307	+		BBR_RS10565	0.81	-2.6
89,320	+		BBR_RS10565	0.82	-1.6
89,320	+		BBR_RS10565	0.82	-4.0
89,320	-		BBR_RS10565	0.82	-1.0
89,324	+		BBR_RS10565	0.82	-0.9
89,339	+		BBR_RS10565	0.83	-3.0
89,396	+		BBR_RS10565	0.85	-3.5
89,396	+		BBR_RS10565	0.85	-3.5
89,421	-		BBR_RS10565	0.86	-1.8
89,431	-		BBR_RS10565	0.87	-2.2
89,438	+		BBR_RS10565	0.87	-2.7
89,443	-		BBR_RS10565	0.87	-2.8
89,446	-		BBR_RS10565	0.87	+0.9
89,448	+		BBR_RS10565	0.87	-2.7
89,448	+		BBR_RS10565	0.87	-2.3
89,452	+		BBR_RS10565	0.87	-2.8
89,452	+		BBR_RS10565	0.87	-1.4
89,456	+		BBR_RS10565	0.88	-1.5
89,480	-		BBR_RS10565	0.89	-1.6
89,480	-		BBR_RS10565	0.89	-2.6
89,494	-		BBR_RS10565	0.89	-2.6
89,507	-		BBR_RS10565	0.90	-3.9
89,513	+		BBR_RS10565	0.90	-1.5
89,513	+		BBR_RS10565	0.90	-2.5
89,521	-				-2.0
89,531	+				-3.5
89,531	+				-2.0
89,533	+				-2.7
89,533	-				-3.2
89,537	+				-1.3
89,581	-				-1.4
89,594	-				-2.4
89,598	+				-3.8
89,606	-				-0.8
89,611	+				-2.1
89,615	+				-1.8
89,615	+				-1.6
89,615	+				-3.0
89,615	+				+0.8
89,615	+				-1.4
89,623	-				-3.3
89,623	-				-1.0
89,630	+				+1.0
89,630	+				-2.9
89,638	-				-2.7
89,643	-				-1.6
89,657	+				-1.1
89,657	+				-2.3
89,657	+				-2.2
89,658	+				-3.0
89,664	+				-3.6
89,664	+				-3.0
89,664	+				-0.6
89,664	+				-2.5
89,664	+				-1.6
89,664	+				-2.6
89,669	+				-3.1
89,669	+				-1.8
89,672	-				-2.7
89,672	-				-0.7
89,675	-				-2.4
89,677	-				-1.7
89,677	-				-2.3
89,681	-				-2.2
89,686	-				-1.7
89,688	+				-4.0
89,693	+				-1.9
89,693	+				-2.5
89,693	+				-0.3
89,698	+				-2.3
89,701	-				-2.7
89,706	-				-1.7
89,716	-				-2.7
89,717	+				-2.9
89,717	+				-2.2
89,717	+				-1.0
89,717	+				-2.2
89,717	+				-2.3
89,718	-				-1.6
89,739	-				-2.0
89,739	-				-2.0
89,755	+				-1.7
89,770	+				-2.0
89,771	+				-2.8
89,786	-				-0.4
89,789	-				-0.4
89,810	+				-2.6
89,810	+				-1.8
89,810	+				-2.8
89,818	-				-0.0
89,818	-				+3.7
89,818	-				-1.8
89,825	+				-0.4
89,825	+				-1.9
89,825	+				-1.3
89,825	+				-0.9
89,825	+				-0.0
89,825	+				+0.9
89,833	-				-2.3
89,833	-				-1.0
89,869	-				-1.3
89,869	-				+2.1
89,869	-				-1.5
89,869	-				+3.6
89,880	+				+1.3
89,880	+				+0.9
89,883	+				-0.3
89,883	+				-0.8
89,893	+				-3.3
89,905	-				-1.0
89,909	-				-2.2
89,926	-				+1.6
89,933	+				-1.7
89,933	+				-1.1
89,941	-				+0.8
89,941	-				-1.7
89,944	-				-0.9
89,944	-				-1.7
89,948	+				-3.6
89,948	+				+1.3
89,959	+				+0.6
89,970	+				-1.8
89,978	-				-0.3
89,988	+				-3.6
89,995	-				-0.3
89,998	-				+2.8
90,041	+				+1.0
90,041	+				+2.1
90,041	-				-3.0
90,041	-				-2.8
90,057	+				+0.6
90,073	-				-1.9
90,088	-		BBR_RS10570	0.11	-0.8
90,088	-		BBR_RS10570	0.11	-1.5
90,120	+		BBR_RS10570	0.25	+0.5
90,133	-		BBR_RS10570	0.31	-0.3
90,133	-		BBR_RS10570	0.31	-1.0
90,133	-		BBR_RS10570	0.31	-2.1
90,133	-		BBR_RS10570	0.31	-2.0
90,150	+		BBR_RS10570	0.39	-0.7
90,173	-		BBR_RS10570	0.49	-0.6
90,189	+		BBR_RS10570	0.56	-0.9
90,207	-		BBR_RS10570	0.64	+0.9
90,212	-		BBR_RS10570	0.66	+0.2
90,214	+		BBR_RS10570	0.67	+1.5
90,230	-		BBR_RS10570	0.74	+1.9
90,245	-		BBR_RS10570	0.80	+0.0
90,253	-		BBR_RS10570	0.84	+0.2
90,259	+		BBR_RS10570	0.86	+1.0
90,270	+				-0.6
90,311	+				-1.5
90,319	-				-3.2
90,328	-				-3.1
90,349	+				-2.3
90,351	+				+0.3
90,359	-				-1.7
90,359	-				-1.7
90,382	-				-1.6
90,409	+				-2.6
90,414	+				+2.4
90,419	+				-2.7
90,444	+				-1.4
90,448	-				+0.1
90,449	+				-1.7
90,449	+				+2.8
90,451	+				+1.7
90,464	-				-3.5
90,464	-				+1.7
90,464	-				-0.4
90,486	+				+0.4
90,486	+				+1.0
90,494	-				+5.0
90,494	-				+0.7
90,494	-				-1.0
90,502	-				-1.2
90,509	+				-0.8
90,509	+				-1.9
90,511	+				+0.5
90,517	-				+0.6
90,524	-				+0.4
90,535	+		BBR_RS10575	0.11	+0.8
90,535	+		BBR_RS10575	0.11	+3.7
90,535	+		BBR_RS10575	0.11	+0.8
90,542	+		BBR_RS10575	0.12	-1.0
90,542	+		BBR_RS10575	0.12	-0.7
90,543	+		BBR_RS10575	0.12	+1.2
90,548	-		BBR_RS10575	0.13	-0.4
90,551	-		BBR_RS10575	0.13	+1.5
90,553	+		BBR_RS10575	0.13	+1.7
90,557	-		BBR_RS10575	0.14	-0.2
90,561	-		BBR_RS10575	0.14	+1.8
90,566	-		BBR_RS10575	0.15	+0.1
90,566	-		BBR_RS10575	0.15	-0.2
90,587	+		BBR_RS10575	0.18	-3.2
90,587	+		BBR_RS10575	0.18	+0.6
90,587	+		BBR_RS10575	0.18	-2.5
90,587	+		BBR_RS10575	0.18	-0.5
90,587	+		BBR_RS10575	0.18	+0.4
90,600	-		BBR_RS10575	0.20	+1.7
90,605	-		BBR_RS10575	0.20	-0.6
90,606	+		BBR_RS10575	0.20	-1.5
90,612	-		BBR_RS10575	0.21	+2.4
90,612	-		BBR_RS10575	0.21	+1.0
90,627	+		BBR_RS10575	0.23	-1.7
90,634	-		BBR_RS10575	0.24	-1.9
90,640	-		BBR_RS10575	0.25	+0.7
90,650	+		BBR_RS10575	0.26	+0.3
90,650	+		BBR_RS10575	0.26	-0.8
90,651	-		BBR_RS10575	0.26	-1.3
90,684	+		BBR_RS10575	0.31	+0.3
90,684	+		BBR_RS10575	0.31	+0.7
90,684	+		BBR_RS10575	0.31	-1.3
90,689	+		BBR_RS10575	0.32	+0.5
90,689	+		BBR_RS10575	0.32	+1.1
90,689	+		BBR_RS10575	0.32	-1.4
90,689	+		BBR_RS10575	0.32	-0.7
90,692	-		BBR_RS10575	0.32	-1.8
90,692	-		BBR_RS10575	0.32	-0.6
90,692	-		BBR_RS10575	0.32	-1.3
90,692	-		BBR_RS10575	0.32	-0.5
90,692	-		BBR_RS10575	0.32	-1.5
90,697	-		BBR_RS10575	0.33	+1.0
90,698	+		BBR_RS10575	0.33	-0.8
90,698	+		BBR_RS10575	0.33	-1.4
90,700	-		BBR_RS10575	0.33	-0.9
90,701	-		BBR_RS10575	0.33	-0.5
90,711	-		BBR_RS10575	0.35	-1.3
90,711	-		BBR_RS10575	0.35	-1.3
90,721	+		BBR_RS10575	0.36	-0.4
90,721	+		BBR_RS10575	0.36	-2.2
90,721	+		BBR_RS10575	0.36	-1.5
90,721	+		BBR_RS10575	0.36	+1.2
90,721	+		BBR_RS10575	0.36	+2.2
90,721	+		BBR_RS10575	0.36	+3.0
90,721	+		BBR_RS10575	0.36	+2.5
90,721	+		BBR_RS10575	0.36	+0.4
90,721	+		BBR_RS10575	0.36	-0.1
90,729	-		BBR_RS10575	0.37	+0.1
90,729	-		BBR_RS10575	0.37	+0.7
90,729	-		BBR_RS10575	0.37	-2.7
90,729	-		BBR_RS10575	0.37	+1.4
90,729	-		BBR_RS10575	0.37	-1.0
90,729	-		BBR_RS10575	0.37	+0.1
90,732	+		BBR_RS10575	0.37	-2.4
90,732	+		BBR_RS10575	0.37	+0.0
90,737	+		BBR_RS10575	0.38	+0.4
90,740	-		BBR_RS10575	0.38	+3.3
90,756	-		BBR_RS10575	0.41	-2.9
90,768	+		BBR_RS10575	0.42	+1.4
90,782	-		BBR_RS10575	0.44	-0.6
90,786	+		BBR_RS10575	0.45	+2.1
90,808	+		BBR_RS10575	0.48	+1.7
90,810	+		BBR_RS10575	0.48	+1.1
90,810	+		BBR_RS10575	0.48	-1.5
90,810	+		BBR_RS10575	0.48	+2.4
90,816	-		BBR_RS10575	0.49	+3.1
90,816	-		BBR_RS10575	0.49	+0.5
90,816	-		BBR_RS10575	0.49	-2.1
90,816	-		BBR_RS10575	0.49	+2.9
90,816	-		BBR_RS10575	0.49	+2.7
90,817	+		BBR_RS10575	0.49	-1.1
90,817	+		BBR_RS10575	0.49	+2.3
90,817	+		BBR_RS10575	0.49	+1.3
90,817	+		BBR_RS10575	0.49	+0.6
90,818	-		BBR_RS10575	0.49	-0.9
90,824	-		BBR_RS10575	0.50	-1.4
90,825	-		BBR_RS10575	0.50	-0.1
90,827	+		BBR_RS10575	0.50	+1.1
90,827	+		BBR_RS10575	0.50	-0.9
90,827	+		BBR_RS10575	0.50	+0.8
90,827	+		BBR_RS10575	0.50	-1.3
90,835	-		BBR_RS10575	0.51	-2.7
90,835	-		BBR_RS10575	0.51	+1.9
90,835	-		BBR_RS10575	0.51	+2.2
90,842	+		BBR_RS10575	0.52	+3.9
90,850	-		BBR_RS10575	0.53	-1.7
90,871	+		BBR_RS10575	0.56	-2.6
90,881	-		BBR_RS10575	0.57	+1.3
90,886	+		BBR_RS10575	0.58	-1.6
90,907	+		BBR_RS10575	0.61	+1.3
90,932	+		BBR_RS10575	0.64	+3.2
90,942	-		BBR_RS10575	0.66	-1.6
90,950	-		BBR_RS10575	0.67	+0.8
90,955	-		BBR_RS10575	0.67	-1.0
90,960	-		BBR_RS10575	0.68	-2.2
90,962	+		BBR_RS10575	0.68	+3.9
90,962	+		BBR_RS10575	0.68	+0.1
90,977	-		BBR_RS10575	0.70	-1.5
90,979	+		BBR_RS10575	0.71	-1.6
90,979	+		BBR_RS10575	0.71	+3.2
90,981	+		BBR_RS10575	0.71	+2.6
91,008	-		BBR_RS10575	0.75	+1.6
91,008	-		BBR_RS10575	0.75	-0.6
91,023	-		BBR_RS10575	0.77	+1.3
91,028	+		BBR_RS10575	0.77	-0.3
91,031	-		BBR_RS10575	0.78	-1.0
91,047	+		BBR_RS10575	0.80	-1.1
91,050	-		BBR_RS10575	0.80	-0.0
91,050	-		BBR_RS10575	0.80	+0.8
91,091	-		BBR_RS10575	0.86	-0.4
91,106	+		BBR_RS10575	0.88	-1.4
91,109	+		BBR_RS10575	0.88	-2.4
91,109	+		BBR_RS10575	0.88	+1.1
91,109	+		BBR_RS10575	0.88	+1.3
91,109	+		BBR_RS10575	0.88	+0.0
91,116	-		BBR_RS10575	0.89	+0.8
91,117	-		BBR_RS10575	0.89	-1.3
91,117	-		BBR_RS10575	0.89	-1.6
91,117	-		BBR_RS10575	0.89	+6.2
91,130	-				+3.6
91,138	-				+1.9
91,138	-				+1.7
91,138	-				-1.5
91,147	+				+1.2
91,172	+				-1.3
91,178	+				+2.4
91,200	+				-1.4
91,211	+				+1.5
91,211	+				+0.5
91,225	+				+1.8
91,244	+				-0.9
91,249	-				-0.5
91,252	-				+1.0
91,262	-				-3.2