Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10285

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6
9,794	-				+2.9
9,847	+				+0.6
9,850	+				+4.2
9,861	+				+0.5
9,869	-				-0.8
9,871	+				-1.6
9,871	+				+0.7
9,871	+				+0.2
9,871	+				-1.3
9,871	+				-1.2
9,876	+				-2.0
9,879	-				-2.9
9,879	-				-0.6
9,879	-				-1.8
9,884	-				-1.4
9,884	-				-1.8
9,884	-				-0.7
9,899	+				-2.6
9,899	+				+0.9
9,899	+				+3.6
9,903	+				-1.0
9,917	+				-0.1
9,943	+				+2.3
9,943	+				+0.0
9,951	-				+3.3
9,953	+				-2.4
9,956	-				-2.3
9,956	-				-1.7
9,956	-				-1.4
9,956	-				+0.4
9,962	+				+2.5
9,969	+				-3.1
9,979	+				-2.7
9,979	+				-3.6
9,979	-				+2.4
9,982	+				+0.0
9,987	+				-1.5
9,987	+				+1.4
9,987	+				+1.1
9,987	+				-1.5
9,987	+				+2.4
9,989	+				-2.3
9,995	-				+4.7
9,995	-				+3.7
10,007	+				+0.1
10,007	+				+1.7
10,009	+				+0.7
10,015	-				+4.7
10,048	+				+2.7
10,073	+				-2.1
10,100	+		BBR_RS10285	0.14	-1.3
10,199	+		BBR_RS10285	0.32	-1.2
10,232	+		BBR_RS10285	0.38	+0.9
10,546	-				-0.1
10,546	-				-0.3
10,559	+				-1.4
10,588	+				+1.1
10,595	+				-2.1
10,626	-				-0.2
10,629	-				+1.1
10,637	+				+0.9
10,652	+				-3.1
10,654	+				-1.8
10,663	+				+0.4
10,687	-				-1.7
10,687	-				-0.1
10,688	-				+3.6
10,691	+				-2.5
10,696	+				-1.9
10,696	+				+2.0
10,698	+				-1.4
10,700	-				-1.5
10,709	+				-2.4
10,709	+				+0.9
10,710	-				+0.2
10,713	+				+3.3
10,713	-				+3.4
10,723	+				+1.3
10,723	+				-0.4
10,731	+				+0.5
10,746	+				-1.0
10,748	+				+2.4
10,756	-		BBR_RS10290	0.11	+0.2
10,766	+		BBR_RS10290	0.12	-1.0
10,774	-		BBR_RS10290	0.12	+0.2
10,789	+		BBR_RS10290	0.14	+1.9
10,799	-		BBR_RS10290	0.15	+0.1
10,809	+		BBR_RS10290	0.16	+0.7
10,809	+		BBR_RS10290	0.16	+0.7
10,817	-		BBR_RS10290	0.17	+1.3
10,817	-		BBR_RS10290	0.17	-1.9
10,819	+		BBR_RS10290	0.17	+3.7
10,821	+		BBR_RS10290	0.17	+0.4
10,829	-		BBR_RS10290	0.18	+3.1
10,829	-		BBR_RS10290	0.18	+3.3
10,829	-		BBR_RS10290	0.18	-2.1
10,889	+		BBR_RS10290	0.24	-3.2
10,889	+		BBR_RS10290	0.24	-2.8
10,889	+		BBR_RS10290	0.24	-1.3
10,889	+		BBR_RS10290	0.24	-2.0
10,897	-		BBR_RS10290	0.24	+0.1
10,897	-		BBR_RS10290	0.24	+0.8
10,912	+		BBR_RS10290	0.26	+0.4
10,920	-		BBR_RS10290	0.27	+1.2
10,929	+		BBR_RS10290	0.28	-1.0
10,935	-		BBR_RS10290	0.28	+3.4
10,935	-		BBR_RS10290	0.28	+2.1
10,937	+		BBR_RS10290	0.28	-0.3
10,958	-		BBR_RS10290	0.30	-1.8
10,966	+		BBR_RS10290	0.31	+0.1
10,966	+		BBR_RS10290	0.31	-1.1
10,969	-		BBR_RS10290	0.32	+4.1
11,003	+		BBR_RS10290	0.35	-1.8
11,003	+		BBR_RS10290	0.35	-1.0
11,003	+		BBR_RS10290	0.35	+1.5
11,003	+		BBR_RS10290	0.35	+0.5
11,011	-		BBR_RS10290	0.36	+1.5
11,011	-		BBR_RS10290	0.36	+1.2
11,024	-		BBR_RS10290	0.37	+1.0
11,026	+		BBR_RS10290	0.37	+1.7
11,034	-		BBR_RS10290	0.38	+2.3
11,041	+		BBR_RS10290	0.39	+1.0
11,041	+		BBR_RS10290	0.39	-0.7
11,041	+		BBR_RS10290	0.39	-0.2
11,042	+		BBR_RS10290	0.39	-0.6
11,048	+		BBR_RS10290	0.39	-2.0
11,049	-		BBR_RS10290	0.39	-1.4
11,068	+		BBR_RS10290	0.41	+0.6
11,068	+		BBR_RS10290	0.41	+1.0
11,081	+		BBR_RS10290	0.43	-1.2
11,081	+		BBR_RS10290	0.43	+0.0
11,084	-		BBR_RS10290	0.43	+1.7
11,084	-		BBR_RS10290	0.43	-2.0
11,084	-		BBR_RS10290	0.43	+1.8
11,086	+		BBR_RS10290	0.43	+0.8
11,095	+		BBR_RS10290	0.44	-0.9
11,095	+		BBR_RS10290	0.44	+1.2
11,095	+		BBR_RS10290	0.44	+0.9
11,103	-		BBR_RS10290	0.45	+1.9
11,103	-		BBR_RS10290	0.45	+2.1
11,103	-		BBR_RS10290	0.45	-0.7
11,103	-		BBR_RS10290	0.45	+0.5
11,117	+		BBR_RS10290	0.46	+0.4
11,125	-		BBR_RS10290	0.47	+1.2
11,134	+		BBR_RS10290	0.48	-1.6
11,156	+		BBR_RS10290	0.50	+2.3
11,156	+		BBR_RS10290	0.50	-0.7
11,156	+		BBR_RS10290	0.50	+0.4
11,158	-		BBR_RS10290	0.50	-2.3
11,162	+		BBR_RS10290	0.51	+0.4
11,162	+		BBR_RS10290	0.51	+1.1
11,162	+		BBR_RS10290	0.51	-1.9
11,164	-		BBR_RS10290	0.51	-1.7
11,170	-		BBR_RS10290	0.51	+1.8
11,175	-		BBR_RS10290	0.52	+1.7
11,179	+		BBR_RS10290	0.52	+0.4
11,187	+		BBR_RS10290	0.53	+0.8
11,195	-		BBR_RS10290	0.54	-1.6
11,206	+		BBR_RS10290	0.55	-0.4
11,206	+		BBR_RS10290	0.55	-3.1
11,211	+		BBR_RS10290	0.55	+1.4
11,211	+		BBR_RS10290	0.55	+1.9
11,211	+		BBR_RS10290	0.55	+3.9
11,211	+		BBR_RS10290	0.55	-1.7
11,211	+		BBR_RS10290	0.55	+2.8
11,211	+		BBR_RS10290	0.55	+1.7
11,211	+		BBR_RS10290	0.55	-0.7
11,211	+		BBR_RS10290	0.55	+2.5
11,219	-		BBR_RS10290	0.56	+1.3
11,219	-		BBR_RS10290	0.56	+1.5
11,219	-		BBR_RS10290	0.56	+5.3
11,219	-		BBR_RS10290	0.56	+0.0
11,229	-		BBR_RS10290	0.57	-0.8
11,230	-		BBR_RS10290	0.57	+0.5
11,233	+		BBR_RS10290	0.58	+0.1
11,243	+		BBR_RS10290	0.59	-1.7
11,243	+		BBR_RS10290	0.59	+0.2
11,251	-		BBR_RS10290	0.59	-1.2
11,253	+		BBR_RS10290	0.60	+1.4
11,258	+		BBR_RS10290	0.60	-0.9
11,258	+		BBR_RS10290	0.60	-0.8
11,258	+		BBR_RS10290	0.60	-0.4
11,258	+		BBR_RS10290	0.60	+4.6
11,258	+		BBR_RS10290	0.60	-1.6
11,258	+		BBR_RS10290	0.60	-1.5
11,258	+		BBR_RS10290	0.60	+0.1
11,258	+		BBR_RS10290	0.60	+1.9
11,258	+		BBR_RS10290	0.60	+0.4
11,258	+		BBR_RS10290	0.60	-1.0
11,261	-		BBR_RS10290	0.60	-1.0
11,261	-		BBR_RS10290	0.60	+0.9
11,263	-		BBR_RS10290	0.61	-0.6
11,266	-		BBR_RS10290	0.61	+1.8
11,266	-		BBR_RS10290	0.61	+1.0
11,266	-		BBR_RS10290	0.61	+1.1
11,266	-		BBR_RS10290	0.61	-0.5
11,266	-		BBR_RS10290	0.61	+1.9
11,266	-		BBR_RS10290	0.61	-1.2
11,288	+		BBR_RS10290	0.63	+0.8
11,302	+		BBR_RS10290	0.64	+1.6
11,302	+		BBR_RS10290	0.64	+0.9
11,302	+		BBR_RS10290	0.64	-0.6
11,302	+		BBR_RS10290	0.64	+0.6
11,302	+		BBR_RS10290	0.64	+0.9
11,302	+		BBR_RS10290	0.64	+2.4
11,302	+		BBR_RS10290	0.64	-0.9
11,302	+		BBR_RS10290	0.64	+1.9
11,302	+		BBR_RS10290	0.64	+0.3
11,307	+		BBR_RS10290	0.65	+2.2
11,307	+		BBR_RS10290	0.65	+1.0
11,310	-		BBR_RS10290	0.65	-2.2
11,310	-		BBR_RS10290	0.65	-2.1
11,312	+		BBR_RS10290	0.65	+0.0
11,312	+		BBR_RS10290	0.65	+0.4
11,325	+		BBR_RS10290	0.67	-2.6
11,332	+		BBR_RS10290	0.67	-2.3
11,333	-		BBR_RS10290	0.67	+0.2
11,333	-		BBR_RS10290	0.67	-2.0
11,333	-		BBR_RS10290	0.67	+2.4
11,335	+		BBR_RS10290	0.68	-1.4
11,335	+		BBR_RS10290	0.68	+1.3
11,335	+		BBR_RS10290	0.68	-1.3
11,335	-		BBR_RS10290	0.68	-2.0
11,335	-		BBR_RS10290	0.68	-1.3
11,337	+		BBR_RS10290	0.68	-3.3
11,340	-		BBR_RS10290	0.68	+2.2
11,345	-		BBR_RS10290	0.69	+1.1
11,345	-		BBR_RS10290	0.69	+1.0
11,366	+		BBR_RS10290	0.71	+0.2
11,367	+		BBR_RS10290	0.71	-1.2
11,367	-		BBR_RS10290	0.71	+3.0
11,370	-		BBR_RS10290	0.71	+1.4
11,375	-		BBR_RS10290	0.72	-1.2
11,375	-		BBR_RS10290	0.72	+2.4
11,375	-		BBR_RS10290	0.72	+0.8
11,375	-		BBR_RS10290	0.72	+1.5
11,375	-		BBR_RS10290	0.72	+0.9
11,381	+		BBR_RS10290	0.72	-0.1
11,381	+		BBR_RS10290	0.72	+4.1
11,382	+		BBR_RS10290	0.72	+1.4
11,388	-		BBR_RS10290	0.73	-0.9
11,388	-		BBR_RS10290	0.73	+2.1
11,388	-		BBR_RS10290	0.73	-0.9
11,388	-		BBR_RS10290	0.73	+0.5
11,398	+		BBR_RS10290	0.74	+0.1
11,398	+		BBR_RS10290	0.74	+0.9
11,398	+		BBR_RS10290	0.74	+0.8
11,398	+		BBR_RS10290	0.74	-0.6
11,403	+		BBR_RS10290	0.74	-1.2
11,403	+		BBR_RS10290	0.74	+0.5
11,403	+		BBR_RS10290	0.74	+2.3
11,403	+		BBR_RS10290	0.74	+3.5
11,403	+		BBR_RS10290	0.74	-1.6
11,406	-		BBR_RS10290	0.75	+1.2
11,406	-		BBR_RS10290	0.75	+1.1
11,408	+		BBR_RS10290	0.75	-0.7
11,408	+		BBR_RS10290	0.75	+1.5
11,408	+		BBR_RS10290	0.75	+1.1
11,408	+		BBR_RS10290	0.75	+1.3
11,410	+		BBR_RS10290	0.75	+0.2
11,410	+		BBR_RS10290	0.75	+1.9
11,411	-		BBR_RS10290	0.75	+1.1
11,411	-		BBR_RS10290	0.75	-0.2
11,411	-		BBR_RS10290	0.75	+2.1
11,411	-		BBR_RS10290	0.75	+1.8
11,411	-		BBR_RS10290	0.75	+4.2
11,411	-		BBR_RS10290	0.75	-0.2
11,415	+		BBR_RS10290	0.76	+0.3
11,415	+		BBR_RS10290	0.76	+0.5
11,415	+		BBR_RS10290	0.76	+0.2
11,418	-		BBR_RS10290	0.76	+1.6
11,423	-		BBR_RS10290	0.76	-0.2
11,423	-		BBR_RS10290	0.76	+0.5
11,423	-		BBR_RS10290	0.76	-0.2
11,432	+		BBR_RS10290	0.77	-1.5
11,432	+		BBR_RS10290	0.77	-2.1
11,432	+		BBR_RS10290	0.77	-2.8
11,440	-		BBR_RS10290	0.78	-1.8
11,444	+		BBR_RS10290	0.78	-0.3
11,452	+		BBR_RS10290	0.79	+3.6
11,452	+		BBR_RS10290	0.79	+3.2
11,460	-		BBR_RS10290	0.80	+0.4
11,479	+		BBR_RS10290	0.82	+3.8
11,487	-		BBR_RS10290	0.83	+0.3
11,487	-		BBR_RS10290	0.83	+0.3
11,494	-		BBR_RS10290	0.83	-1.7
11,494	-		BBR_RS10290	0.83	+0.6
11,510	+		BBR_RS10290	0.85	+1.6
11,510	+		BBR_RS10290	0.85	+4.0
11,518	-		BBR_RS10290	0.86	-1.4
11,533	-		BBR_RS10290	0.87	+1.4
11,533	-		BBR_RS10290	0.87	-2.4
11,533	-		BBR_RS10290	0.87	-2.1
11,535	+		BBR_RS10290	0.87	-1.7
11,540	+		BBR_RS10290	0.88	+2.6
11,543	-		BBR_RS10290	0.88	-1.3
11,548	-		BBR_RS10290	0.89	+1.8
11,558	-		BBR_RS10290	0.90	+0.4
11,558	-		BBR_RS10290	0.90	+1.9
11,558	-		BBR_RS10290	0.90	+1.2
11,569	-				-2.2
11,573	+				-1.2
11,573	+				+0.3