Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_829 and HP15_830 are separated by 353 nucleotides HP15_830 and HP15_831 are separated by 2 nucleotides HP15_831 and HP15_832 are separated by 192 nucleotides
HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146
_829
HP15_830: HP15_830 - conserved hypothetical protein, at 848,500 to 849,003
_830
HP15_831: HP15_831 - protein containing glutaredoxin domain, at 849,006 to 849,806
_831
HP15_832: HP15_832 - aldo/keto reductase-like diketogulonate reductase, at 849,999 to 850,934
_832
Position (kb)
849
850 Strain fitness (log2 ratio)
-2
-1
0
1 at 848.017 kb on + strand at 848.534 kb on - strand at 848.608 kb on + strand, within HP15_830 at 848.608 kb on + strand, within HP15_830 at 848.733 kb on + strand, within HP15_830 at 848.956 kb on - strand at 848.956 kb on - strand at 848.958 kb on + strand at 848.966 kb on - strand at 848.966 kb on - strand at 848.966 kb on - strand at 848.966 kb on - strand at 849.107 kb on - strand, within HP15_831 at 849.201 kb on + strand, within HP15_831 at 849.219 kb on - strand, within HP15_831 at 849.335 kb on - strand, within HP15_831 at 849.343 kb on + strand, within HP15_831 at 849.393 kb on + strand, within HP15_831 at 849.437 kb on - strand, within HP15_831 at 849.437 kb on - strand, within HP15_831 at 849.442 kb on - strand, within HP15_831 at 849.475 kb on + strand, within HP15_831 at 849.543 kb on + strand, within HP15_831 at 849.628 kb on - strand, within HP15_831 at 849.628 kb on - strand, within HP15_831 at 849.717 kb on - strand, within HP15_831 at 849.732 kb on - strand at 849.732 kb on - strand at 849.734 kb on + strand at 849.742 kb on - strand at 849.755 kb on + strand at 849.763 kb on - strand at 849.763 kb on - strand at 849.921 kb on + strand at 849.921 kb on - strand at 849.923 kb on + strand at 849.931 kb on + strand at 850.036 kb on + strand at 850.099 kb on - strand, within HP15_832 at 850.145 kb on - strand, within HP15_832 at 850.167 kb on - strand, within HP15_832 at 850.350 kb on + strand, within HP15_832 at 850.462 kb on + strand, within HP15_832 at 850.490 kb on + strand, within HP15_832 at 850.601 kb on + strand, within HP15_832 at 850.619 kb on - strand, within HP15_832 at 850.626 kb on + strand, within HP15_832 at 850.663 kb on + strand, within HP15_832 at 850.663 kb on + strand, within HP15_832
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 848,017 + -0.7 848,534 - -2.3 848,608 + HP15_830 0.21 +0.8 848,608 + HP15_830 0.21 +0.3 848,733 + HP15_830 0.46 +0.6 848,956 - -0.1 848,956 - +0.5 848,958 + -2.2 848,966 - -1.7 848,966 - -1.0 848,966 - +0.4 848,966 - -1.2 849,107 - HP15_831 0.13 +0.5 849,201 + HP15_831 0.24 -1.2 849,219 - HP15_831 0.27 -2.2 849,335 - HP15_831 0.41 +0.6 849,343 + HP15_831 0.42 +0.0 849,393 + HP15_831 0.48 -0.5 849,437 - HP15_831 0.54 -0.4 849,437 - HP15_831 0.54 +0.0 849,442 - HP15_831 0.54 -0.8 849,475 + HP15_831 0.59 -1.4 849,543 + HP15_831 0.67 +0.5 849,628 - HP15_831 0.78 +0.3 849,628 - HP15_831 0.78 -1.2 849,717 - HP15_831 0.89 -1.4 849,732 - +0.5 849,732 - -1.3 849,734 + +0.2 849,742 - -0.0 849,755 + +0.5 849,763 - +1.6 849,763 - +1.3 849,921 + -1.2 849,921 - +1.6 849,923 + -1.2 849,931 + -0.9 850,036 + +0.1 850,099 - HP15_832 0.11 -0.4 850,145 - HP15_832 0.16 -1.0 850,167 - HP15_832 0.18 +0.8 850,350 + HP15_832 0.38 +0.1 850,462 + HP15_832 0.49 +0.1 850,490 + HP15_832 0.52 +1.3 850,601 + HP15_832 0.64 +1.4 850,619 - HP15_832 0.66 +0.4 850,626 + HP15_832 0.67 +0.9 850,663 + HP15_832 0.71 -1.0 850,663 + HP15_832 0.71 +0.7
Or see this region's nucleotide sequence