Strain Fitness in Marinobacter adhaerens HP15 around HP15_831

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_829 and HP15_830 are separated by 353 nucleotidesHP15_830 and HP15_831 are separated by 2 nucleotidesHP15_831 and HP15_832 are separated by 192 nucleotides HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146 _829 HP15_830: HP15_830 - conserved hypothetical protein, at 848,500 to 849,003 _830 HP15_831: HP15_831 - protein containing glutaredoxin domain, at 849,006 to 849,806 _831 HP15_832: HP15_832 - aldo/keto reductase-like diketogulonate reductase, at 849,999 to 850,934 _832 Position (kb) 849 850Strain fitness (log2 ratio) -2 -1 0 1at 848.017 kb on + strandat 848.534 kb on - strandat 848.608 kb on + strand, within HP15_830at 848.608 kb on + strand, within HP15_830at 848.733 kb on + strand, within HP15_830at 848.956 kb on - strandat 848.956 kb on - strandat 848.958 kb on + strandat 848.966 kb on - strandat 848.966 kb on - strandat 848.966 kb on - strandat 848.966 kb on - strandat 849.107 kb on - strand, within HP15_831at 849.201 kb on + strand, within HP15_831at 849.219 kb on - strand, within HP15_831at 849.335 kb on - strand, within HP15_831at 849.343 kb on + strand, within HP15_831at 849.393 kb on + strand, within HP15_831at 849.437 kb on - strand, within HP15_831at 849.437 kb on - strand, within HP15_831at 849.442 kb on - strand, within HP15_831at 849.475 kb on + strand, within HP15_831at 849.543 kb on + strand, within HP15_831at 849.628 kb on - strand, within HP15_831at 849.628 kb on - strand, within HP15_831at 849.717 kb on - strand, within HP15_831at 849.732 kb on - strandat 849.732 kb on - strandat 849.734 kb on + strandat 849.742 kb on - strandat 849.755 kb on + strandat 849.763 kb on - strandat 849.763 kb on - strandat 849.921 kb on + strandat 849.921 kb on - strandat 849.923 kb on + strandat 849.931 kb on + strandat 850.036 kb on + strandat 850.099 kb on - strand, within HP15_832at 850.145 kb on - strand, within HP15_832at 850.167 kb on - strand, within HP15_832at 850.350 kb on + strand, within HP15_832at 850.462 kb on + strand, within HP15_832at 850.490 kb on + strand, within HP15_832at 850.601 kb on + strand, within HP15_832at 850.619 kb on - strand, within HP15_832at 850.626 kb on + strand, within HP15_832at 850.663 kb on + strand, within HP15_832at 850.663 kb on + strand, within HP15_832

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
848,017 + -0.7
848,534 - -2.3
848,608 + HP15_830 0.21 +0.8
848,608 + HP15_830 0.21 +0.3
848,733 + HP15_830 0.46 +0.6
848,956 - -0.1
848,956 - +0.5
848,958 + -2.2
848,966 - -1.7
848,966 - -1.0
848,966 - +0.4
848,966 - -1.2
849,107 - HP15_831 0.13 +0.5
849,201 + HP15_831 0.24 -1.2
849,219 - HP15_831 0.27 -2.2
849,335 - HP15_831 0.41 +0.6
849,343 + HP15_831 0.42 +0.0
849,393 + HP15_831 0.48 -0.5
849,437 - HP15_831 0.54 -0.4
849,437 - HP15_831 0.54 +0.0
849,442 - HP15_831 0.54 -0.8
849,475 + HP15_831 0.59 -1.4
849,543 + HP15_831 0.67 +0.5
849,628 - HP15_831 0.78 +0.3
849,628 - HP15_831 0.78 -1.2
849,717 - HP15_831 0.89 -1.4
849,732 - +0.5
849,732 - -1.3
849,734 + +0.2
849,742 - -0.0
849,755 + +0.5
849,763 - +1.6
849,763 - +1.3
849,921 + -1.2
849,921 - +1.6
849,923 + -1.2
849,931 + -0.9
850,036 + +0.1
850,099 - HP15_832 0.11 -0.4
850,145 - HP15_832 0.16 -1.0
850,167 - HP15_832 0.18 +0.8
850,350 + HP15_832 0.38 +0.1
850,462 + HP15_832 0.49 +0.1
850,490 + HP15_832 0.52 +1.3
850,601 + HP15_832 0.64 +1.4
850,619 - HP15_832 0.66 +0.4
850,626 + HP15_832 0.67 +0.9
850,663 + HP15_832 0.71 -1.0
850,663 + HP15_832 0.71 +0.7

Or see this region's nucleotide sequence