Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_745 and HP15_746 are separated by 246 nucleotides HP15_746 and HP15_747 are separated by 165 nucleotides
HP15_745: HP15_745 - conserved hypothetical protein, at 753,496 to 754,257
_745
HP15_746: HP15_746 - two component transcriptional regulator, winged helix family, at 754,504 to 755,241
_746
HP15_747: HP15_747 - integral membrane sensor signal transduction histidine kinase, at 755,407 to 756,882
_747
Position (kb) 754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 753.560 kb on + strand at 753.575 kb on - strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.635 kb on + strand, within HP15_745 at 753.754 kb on - strand, within HP15_745 at 753.863 kb on - strand, within HP15_745 at 753.863 kb on - strand at 753.934 kb on + strand, within HP15_745 at 754.043 kb on + strand, within HP15_745 at 754.072 kb on + strand, within HP15_745 at 754.175 kb on + strand, within HP15_745 at 754.185 kb on + strand at 754.193 kb on - strand at 754.335 kb on - strand at 754.382 kb on + strand at 754.511 kb on + strand at 754.610 kb on + strand, within HP15_746 at 755.008 kb on + strand, within HP15_746 at 755.016 kb on - strand, within HP15_746 at 755.016 kb on - strand, within HP15_746 at 755.124 kb on - strand, within HP15_746 at 755.137 kb on - strand, within HP15_746 at 755.193 kb on + strand at 755.193 kb on + strand at 755.215 kb on + strand at 755.298 kb on + strand at 755.792 kb on + strand, within HP15_747 at 755.925 kb on - strand, within HP15_747
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 753,560 + +0.3 753,575 - HP15_745 0.10 -2.3 753,635 + HP15_745 0.18 -0.7 753,635 + HP15_745 0.18 -0.7 753,754 - HP15_745 0.34 +0.1 753,863 - HP15_745 0.48 -0.8 753,863 - +3.5 753,934 + HP15_745 0.57 -1.5 754,043 + HP15_745 0.72 +0.4 754,072 + HP15_745 0.76 -2.1 754,175 + HP15_745 0.89 -0.4 754,185 + +0.2 754,193 - -0.7 754,335 - -0.0 754,382 + +0.1 754,511 + -0.9 754,610 + HP15_746 0.14 -0.8 755,008 + HP15_746 0.68 -1.3 755,016 - HP15_746 0.69 -1.0 755,016 - HP15_746 0.69 -1.4 755,124 - HP15_746 0.84 -1.3 755,137 - HP15_746 0.86 -1.0 755,193 + -0.7 755,193 + -1.1 755,215 + +2.3 755,298 + -0.9 755,792 + HP15_747 0.26 -2.1 755,925 - HP15_747 0.35 -0.7
Or see this region's nucleotide sequence