Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07480

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07470 and PGA1_c07480 are separated by 143 nucleotidesPGA1_c07480 and PGA1_c07490 overlap by 1 nucleotidesPGA1_c07490 and PGA1_c07500 are separated by 98 nucleotidesPGA1_c07500 and PGA1_c07510 are separated by 41 nucleotides PGA1_c07470: PGA1_c07470 - putative oligoendopeptidase, at 770,849 to 772,693 _c07470 PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799 _c07480 PGA1_c07490: PGA1_c07490 - Putative sterol carrier protein, at 773,799 to 774,086 _c07490 PGA1_c07500: PGA1_c07500 - hypothetical protein, at 774,185 to 774,754 _c07500 PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813 _c07510 Position (kb) 772 773 774Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 771.935 kb on - strand, within PGA1_c07470at 771.940 kb on - strand, within PGA1_c07470at 772.030 kb on - strand, within PGA1_c07470at 772.080 kb on + strand, within PGA1_c07470at 772.202 kb on - strand, within PGA1_c07470at 772.256 kb on + strand, within PGA1_c07470at 772.270 kb on + strand, within PGA1_c07470at 772.354 kb on - strand, within PGA1_c07470at 772.411 kb on - strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.460 kb on - strand, within PGA1_c07470at 772.460 kb on - strand, within PGA1_c07470at 772.462 kb on - strand, within PGA1_c07470at 772.465 kb on - strand, within PGA1_c07470at 772.465 kb on - strand, within PGA1_c07470at 772.530 kb on + strandat 772.615 kb on - strandat 772.625 kb on + strandat 772.644 kb on + strandat 772.646 kb on - strandat 772.718 kb on - strandat 772.749 kb on - strandat 772.792 kb on + strandat 772.815 kb on - strandat 772.817 kb on + strandat 772.817 kb on + strandat 772.819 kb on - strandat 772.909 kb on - strandat 772.937 kb on + strand, within PGA1_c07480at 772.972 kb on + strand, within PGA1_c07480at 773.019 kb on + strand, within PGA1_c07480at 773.024 kb on + strand, within PGA1_c07480at 773.032 kb on - strand, within PGA1_c07480at 773.053 kb on + strand, within PGA1_c07480at 773.078 kb on + strand, within PGA1_c07480at 773.090 kb on - strand, within PGA1_c07480at 773.135 kb on + strand, within PGA1_c07480at 773.135 kb on + strand, within PGA1_c07480at 773.143 kb on - strand, within PGA1_c07480at 773.143 kb on - strand, within PGA1_c07480at 773.161 kb on - strand, within PGA1_c07480at 773.200 kb on + strand, within PGA1_c07480at 773.200 kb on + strand, within PGA1_c07480at 773.298 kb on + strand, within PGA1_c07480at 773.298 kb on + strand, within PGA1_c07480at 773.301 kb on - strand, within PGA1_c07480at 773.301 kb on - strand, within PGA1_c07480at 773.326 kb on - strand, within PGA1_c07480at 773.352 kb on - strand, within PGA1_c07480at 773.352 kb on - strand, within PGA1_c07480at 773.362 kb on - strand, within PGA1_c07480at 773.379 kb on + strand, within PGA1_c07480at 773.382 kb on + strand, within PGA1_c07480at 773.409 kb on + strand, within PGA1_c07480at 773.562 kb on + strand, within PGA1_c07480at 773.582 kb on + strand, within PGA1_c07480at 773.586 kb on + strand, within PGA1_c07480at 773.586 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.697 kb on + strand, within PGA1_c07480at 773.731 kb on + strandat 773.761 kb on + strandat 773.773 kb on + strandat 773.797 kb on + strandat 773.805 kb on - strandat 773.817 kb on - strandat 773.913 kb on + strand, within PGA1_c07490at 774.002 kb on - strand, within PGA1_c07490at 774.069 kb on + strandat 774.086 kb on + strandat 774.107 kb on - strandat 774.166 kb on + strandat 774.172 kb on + strandat 774.172 kb on + strandat 774.174 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.213 kb on - strandat 774.229 kb on + strandat 774.229 kb on + strandat 774.237 kb on - strandat 774.247 kb on - strand, within PGA1_c07500at 774.247 kb on - strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.311 kb on + strand, within PGA1_c07500at 774.318 kb on - strand, within PGA1_c07500at 774.318 kb on - strand, within PGA1_c07500at 774.338 kb on + strand, within PGA1_c07500at 774.338 kb on + strand, within PGA1_c07500at 774.341 kb on - strand, within PGA1_c07500at 774.343 kb on + strand, within PGA1_c07500at 774.356 kb on - strand, within PGA1_c07500at 774.356 kb on - strand, within PGA1_c07500at 774.362 kb on + strand, within PGA1_c07500at 774.370 kb on - strand, within PGA1_c07500at 774.373 kb on + strand, within PGA1_c07500at 774.420 kb on + strand, within PGA1_c07500at 774.462 kb on - strand, within PGA1_c07500at 774.502 kb on + strand, within PGA1_c07500at 774.502 kb on + strand, within PGA1_c07500at 774.577 kb on + strand, within PGA1_c07500at 774.585 kb on - strand, within PGA1_c07500at 774.631 kb on + strand, within PGA1_c07500at 774.631 kb on + strand, within PGA1_c07500at 774.639 kb on - strand, within PGA1_c07500at 774.661 kb on - strand, within PGA1_c07500at 774.669 kb on - strand, within PGA1_c07500at 774.676 kb on + strand, within PGA1_c07500at 774.684 kb on - strand, within PGA1_c07500at 774.727 kb on + strandat 774.742 kb on - strandat 774.742 kb on - strandat 774.749 kb on + strandat 774.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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771,935 - PGA1_c07470 0.59 +0.4
771,940 - PGA1_c07470 0.59 -0.2
772,030 - PGA1_c07470 0.64 -0.3
772,080 + PGA1_c07470 0.67 -1.7
772,202 - PGA1_c07470 0.73 -0.9
772,256 + PGA1_c07470 0.76 +0.7
772,270 + PGA1_c07470 0.77 +3.2
772,354 - PGA1_c07470 0.82 +0.1
772,411 - PGA1_c07470 0.85 -1.3
772,447 + PGA1_c07470 0.87 -1.2
772,447 + PGA1_c07470 0.87 +0.1
772,447 + PGA1_c07470 0.87 -1.4
772,447 + PGA1_c07470 0.87 -0.2
772,447 + PGA1_c07470 0.87 +1.6
772,447 + PGA1_c07470 0.87 -1.9
772,447 + PGA1_c07470 0.87 +0.4
772,455 - PGA1_c07470 0.87 -0.6
772,455 - PGA1_c07470 0.87 +0.4
772,455 - PGA1_c07470 0.87 +0.2
772,455 - PGA1_c07470 0.87 -1.6
772,455 - PGA1_c07470 0.87 +0.5
772,455 - PGA1_c07470 0.87 +0.4
772,455 - PGA1_c07470 0.87 +0.1
772,455 - PGA1_c07470 0.87 +1.4
772,455 - PGA1_c07470 0.87 -0.6
772,455 - PGA1_c07470 0.87 +0.2
772,455 - PGA1_c07470 0.87 -0.6
772,460 - PGA1_c07470 0.87 -2.0
772,460 - PGA1_c07470 0.87 -1.9
772,462 - PGA1_c07470 0.87 -0.2
772,465 - PGA1_c07470 0.88 +0.7
772,465 - PGA1_c07470 0.88 -0.6
772,530 + +1.4
772,615 - +0.1
772,625 + -1.2
772,644 + -0.9
772,646 - -0.2
772,718 - -1.0
772,749 - +1.4
772,792 + +1.4
772,815 - -0.6
772,817 + +0.8
772,817 + -0.6
772,819 - +0.6
772,909 - -1.2
772,937 + PGA1_c07480 0.10 -2.2
772,972 + PGA1_c07480 0.14 +0.8
773,019 + PGA1_c07480 0.19 -3.4
773,024 + PGA1_c07480 0.19 +0.4
773,032 - PGA1_c07480 0.20 +0.4
773,053 + PGA1_c07480 0.22 +0.4
773,078 + PGA1_c07480 0.25 -0.9
773,090 - PGA1_c07480 0.26 -1.6
773,135 + PGA1_c07480 0.31 -0.4
773,135 + PGA1_c07480 0.31 -1.6
773,143 - PGA1_c07480 0.32 -1.5
773,143 - PGA1_c07480 0.32 +1.4
773,161 - PGA1_c07480 0.34 -1.0
773,200 + PGA1_c07480 0.38 -1.0
773,200 + PGA1_c07480 0.38 -1.7
773,298 + PGA1_c07480 0.48 -0.6
773,298 + PGA1_c07480 0.48 -0.6
773,301 - PGA1_c07480 0.48 -1.6
773,301 - PGA1_c07480 0.48 +0.6
773,326 - PGA1_c07480 0.51 +0.3
773,352 - PGA1_c07480 0.53 +0.4
773,352 - PGA1_c07480 0.53 -2.1
773,362 - PGA1_c07480 0.55 -0.4
773,379 + PGA1_c07480 0.56 -2.0
773,382 + PGA1_c07480 0.57 -0.6
773,409 + PGA1_c07480 0.59 -2.2
773,562 + PGA1_c07480 0.75 -1.2
773,582 + PGA1_c07480 0.77 -1.5
773,586 + PGA1_c07480 0.78 -0.2
773,586 + PGA1_c07480 0.78 -2.5
773,587 + PGA1_c07480 0.78 -2.0
773,587 + PGA1_c07480 0.78 -1.8
773,587 + PGA1_c07480 0.78 -0.9
773,697 + PGA1_c07480 0.89 -1.4
773,731 + -2.0
773,761 + -0.7
773,773 + -1.0
773,797 + -1.7
773,805 - -2.4
773,817 - -2.3
773,913 + PGA1_c07490 0.40 -1.2
774,002 - PGA1_c07490 0.70 -1.4
774,069 + -2.5
774,086 + -0.8
774,107 - -0.7
774,166 + -0.2
774,172 + +1.4
774,172 + -0.4
774,174 - -1.9
774,180 - -0.7
774,180 - -2.5
774,180 - -2.0
774,180 - -2.0
774,213 - -0.3
774,229 + -0.4
774,229 + -1.1
774,237 - +0.7
774,247 - PGA1_c07500 0.11 -1.1
774,247 - PGA1_c07500 0.11 +0.4
774,310 + PGA1_c07500 0.22 +0.0
774,310 + PGA1_c07500 0.22 -0.2
774,310 + PGA1_c07500 0.22 +0.3
774,311 + PGA1_c07500 0.22 +0.8
774,318 - PGA1_c07500 0.23 +0.8
774,318 - PGA1_c07500 0.23 +0.9
774,338 + PGA1_c07500 0.27 +0.1
774,338 + PGA1_c07500 0.27 +1.2
774,341 - PGA1_c07500 0.27 +1.2
774,343 + PGA1_c07500 0.28 -1.2
774,356 - PGA1_c07500 0.30 -2.3
774,356 - PGA1_c07500 0.30 +0.4
774,362 + PGA1_c07500 0.31 +0.4
774,370 - PGA1_c07500 0.32 +0.4
774,373 + PGA1_c07500 0.33 +1.6
774,420 + PGA1_c07500 0.41 +1.3
774,462 - PGA1_c07500 0.49 +0.3
774,502 + PGA1_c07500 0.56 +0.8
774,502 + PGA1_c07500 0.56 +0.7
774,577 + PGA1_c07500 0.69 +0.8
774,585 - PGA1_c07500 0.70 +0.4
774,631 + PGA1_c07500 0.78 -2.0
774,631 + PGA1_c07500 0.78 -1.3
774,639 - PGA1_c07500 0.80 +0.1
774,661 - PGA1_c07500 0.84 -0.9
774,669 - PGA1_c07500 0.85 -0.9
774,676 + PGA1_c07500 0.86 +0.3
774,684 - PGA1_c07500 0.88 -0.6
774,727 + +1.8
774,742 - -2.0
774,742 - +0.3
774,749 + -0.9
774,781 - -1.7

Or see this region's nucleotide sequence