Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04480

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04460 and PGA1_c04470 are separated by 111 nucleotidesPGA1_c04470 and PGA1_c04480 are separated by 120 nucleotidesPGA1_c04480 and PGA1_c04490 are separated by 9 nucleotides PGA1_c04460: PGA1_c04460 - hypothetical protein, at 435,593 to 436,102 _c04460 PGA1_c04470: PGA1_c04470 - putative glutathione S-transferase, at 436,214 to 436,843 _c04470 PGA1_c04480: PGA1_c04480 - transcriptional regulator, TetR family, at 436,964 to 437,629 _c04480 PGA1_c04490: PGA1_c04490 - indolepyruvate oxidoreductase, at 437,639 to 441,061 _c04490 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 435.965 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.016 kb on - strand, within PGA1_c04460at 436.016 kb on - strand, within PGA1_c04460at 436.016 kb on - strand, within PGA1_c04460at 436.054 kb on + strandat 436.062 kb on - strandat 436.097 kb on - strandat 436.105 kb on - strandat 436.163 kb on + strandat 436.168 kb on + strandat 436.176 kb on - strandat 436.176 kb on - strandat 436.178 kb on + strandat 436.185 kb on + strandat 436.187 kb on + strandat 436.187 kb on - strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.228 kb on + strandat 436.236 kb on - strandat 436.236 kb on - strandat 436.280 kb on + strand, within PGA1_c04470at 436.288 kb on - strand, within PGA1_c04470at 436.317 kb on + strand, within PGA1_c04470at 436.320 kb on - strand, within PGA1_c04470at 436.355 kb on - strand, within PGA1_c04470at 436.355 kb on - strand, within PGA1_c04470at 436.355 kb on - strand, within PGA1_c04470at 436.392 kb on + strand, within PGA1_c04470at 436.408 kb on + strand, within PGA1_c04470at 436.444 kb on + strand, within PGA1_c04470at 436.444 kb on + strand, within PGA1_c04470at 436.444 kb on - strand, within PGA1_c04470at 436.452 kb on - strand, within PGA1_c04470at 436.462 kb on - strand, within PGA1_c04470at 436.472 kb on + strand, within PGA1_c04470at 436.489 kb on + strand, within PGA1_c04470at 436.490 kb on + strand, within PGA1_c04470at 436.490 kb on + strand, within PGA1_c04470at 436.498 kb on - strand, within PGA1_c04470at 436.525 kb on - strand, within PGA1_c04470at 436.565 kb on + strand, within PGA1_c04470at 436.702 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.707 kb on + strand, within PGA1_c04470at 436.707 kb on + strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.715 kb on - strand, within PGA1_c04470at 436.768 kb on - strand, within PGA1_c04470at 436.775 kb on + strand, within PGA1_c04470at 436.781 kb on - strandat 436.788 kb on + strandat 436.788 kb on - strandat 436.830 kb on + strandat 436.830 kb on + strandat 436.830 kb on + strandat 436.838 kb on - strandat 436.856 kb on + strandat 436.874 kb on + strandat 436.874 kb on + strandat 436.880 kb on - strandat 436.901 kb on + strandat 436.924 kb on + strandat 436.929 kb on + strandat 436.978 kb on - strandat 437.012 kb on - strandat 437.031 kb on - strand, within PGA1_c04480at 437.090 kb on - strand, within PGA1_c04480at 437.090 kb on - strand, within PGA1_c04480at 437.090 kb on - strand, within PGA1_c04480at 437.091 kb on - strand, within PGA1_c04480at 437.092 kb on + strand, within PGA1_c04480at 437.100 kb on - strand, within PGA1_c04480at 437.100 kb on - strand, within PGA1_c04480at 437.100 kb on - strand, within PGA1_c04480at 437.104 kb on + strand, within PGA1_c04480at 437.183 kb on + strand, within PGA1_c04480at 437.183 kb on + strand, within PGA1_c04480at 437.183 kb on + strand, within PGA1_c04480at 437.193 kb on + strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.206 kb on - strand, within PGA1_c04480at 437.206 kb on - strand, within PGA1_c04480at 437.243 kb on + strand, within PGA1_c04480at 437.346 kb on + strand, within PGA1_c04480at 437.385 kb on - strand, within PGA1_c04480at 437.455 kb on + strand, within PGA1_c04480at 437.477 kb on - strand, within PGA1_c04480at 437.488 kb on + strand, within PGA1_c04480at 437.498 kb on + strand, within PGA1_c04480at 437.499 kb on + strand, within PGA1_c04480at 437.511 kb on + strand, within PGA1_c04480at 437.561 kb on + strand, within PGA1_c04480at 437.582 kb on - strandat 437.582 kb on - strandat 437.623 kb on + strandat 437.670 kb on + strandat 437.670 kb on + strandat 437.678 kb on + strandat 437.678 kb on - strandat 437.712 kb on - strandat 437.740 kb on - strandat 437.764 kb on + strandat 437.764 kb on + strandat 437.772 kb on - strandat 437.772 kb on - strandat 437.772 kb on - strandat 437.774 kb on + strandat 437.782 kb on - strandat 437.799 kb on + strandat 437.807 kb on - strandat 437.822 kb on - strandat 437.825 kb on + strandat 437.900 kb on + strandat 437.908 kb on - strandat 437.977 kb on - strandat 438.024 kb on + strand, within PGA1_c04490at 438.141 kb on - strand, within PGA1_c04490at 438.141 kb on - strand, within PGA1_c04490at 438.150 kb on - strand, within PGA1_c04490at 438.161 kb on + strand, within PGA1_c04490at 438.168 kb on + strand, within PGA1_c04490at 438.181 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.183 kb on + strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.191 kb on - strand, within PGA1_c04490at 438.193 kb on + strand, within PGA1_c04490at 438.193 kb on + strand, within PGA1_c04490at 438.201 kb on - strand, within PGA1_c04490at 438.201 kb on - strand, within PGA1_c04490at 438.262 kb on + strand, within PGA1_c04490at 438.309 kb on - strand, within PGA1_c04490at 438.381 kb on + strand, within PGA1_c04490at 438.409 kb on + strand, within PGA1_c04490at 438.409 kb on + strand, within PGA1_c04490at 438.409 kb on + strand, within PGA1_c04490at 438.428 kb on + strand, within PGA1_c04490at 438.455 kb on - strand, within PGA1_c04490at 438.460 kb on - strand, within PGA1_c04490at 438.460 kb on - strand, within PGA1_c04490at 438.460 kb on - strand, within PGA1_c04490at 438.460 kb on - strand, within PGA1_c04490at 438.460 kb on - strand, within PGA1_c04490at 438.476 kb on + strand, within PGA1_c04490at 438.532 kb on - strand, within PGA1_c04490at 438.558 kb on + strand, within PGA1_c04490at 438.565 kb on + strand, within PGA1_c04490at 438.583 kb on + strand, within PGA1_c04490at 438.583 kb on + strand, within PGA1_c04490at 438.614 kb on + strand, within PGA1_c04490at 438.622 kb on - strand, within PGA1_c04490

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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435,965 + PGA1_c04460 0.73 +0.2
436,008 + PGA1_c04460 0.81 +0.3
436,008 + PGA1_c04460 0.81 -0.6
436,008 + PGA1_c04460 0.81 +1.5
436,008 + PGA1_c04460 0.81 +0.2
436,008 + PGA1_c04460 0.81 -1.5
436,008 + PGA1_c04460 0.81 +2.5
436,008 + PGA1_c04460 0.81 +0.7
436,016 - PGA1_c04460 0.83 -0.5
436,016 - PGA1_c04460 0.83 -0.3
436,016 - PGA1_c04460 0.83 -0.1
436,054 + +0.2
436,062 - +0.3
436,097 - -1.6
436,105 - -1.1
436,163 + -1.6
436,168 + -1.3
436,176 - -0.5
436,176 - -0.3
436,178 + +3.9
436,185 + +0.3
436,187 + -0.4
436,187 - -0.0
436,198 + +0.1
436,198 + -0.8
436,198 + -0.1
436,198 + -1.3
436,198 + -1.2
436,228 + +1.5
436,236 - -0.3
436,236 - -1.3
436,280 + PGA1_c04470 0.10 -0.0
436,288 - PGA1_c04470 0.12 +0.3
436,317 + PGA1_c04470 0.16 -0.8
436,320 - PGA1_c04470 0.17 -0.7
436,355 - PGA1_c04470 0.22 +0.8
436,355 - PGA1_c04470 0.22 -1.0
436,355 - PGA1_c04470 0.22 +0.1
436,392 + PGA1_c04470 0.28 +1.0
436,408 + PGA1_c04470 0.31 -0.4
436,444 + PGA1_c04470 0.37 +1.1
436,444 + PGA1_c04470 0.37 +1.0
436,444 - PGA1_c04470 0.37 +0.4
436,452 - PGA1_c04470 0.38 +1.5
436,462 - PGA1_c04470 0.39 -1.0
436,472 + PGA1_c04470 0.41 -0.8
436,489 + PGA1_c04470 0.44 -1.9
436,490 + PGA1_c04470 0.44 -0.9
436,490 + PGA1_c04470 0.44 +1.0
436,498 - PGA1_c04470 0.45 -0.5
436,525 - PGA1_c04470 0.49 -0.6
436,565 + PGA1_c04470 0.56 +0.4
436,702 + PGA1_c04470 0.77 -1.2
436,706 + PGA1_c04470 0.78 +1.0
436,706 + PGA1_c04470 0.78 -1.6
436,706 + PGA1_c04470 0.78 -0.8
436,706 + PGA1_c04470 0.78 -0.6
436,706 + PGA1_c04470 0.78 -1.3
436,707 + PGA1_c04470 0.78 -0.3
436,707 + PGA1_c04470 0.78 +1.5
436,714 - PGA1_c04470 0.79 +1.1
436,714 - PGA1_c04470 0.79 +0.5
436,714 - PGA1_c04470 0.79 -0.3
436,714 - PGA1_c04470 0.79 -0.8
436,714 - PGA1_c04470 0.79 +1.0
436,714 - PGA1_c04470 0.79 +1.0
436,714 - PGA1_c04470 0.79 -0.6
436,714 - PGA1_c04470 0.79 +0.4
436,714 - PGA1_c04470 0.79 +1.5
436,714 - PGA1_c04470 0.79 +0.2
436,715 - PGA1_c04470 0.80 +0.5
436,768 - PGA1_c04470 0.88 -0.2
436,775 + PGA1_c04470 0.89 -0.9
436,781 - -0.0
436,788 + -2.3
436,788 - +1.1
436,830 + +0.5
436,830 + +0.5
436,830 + +0.0
436,838 - +0.5
436,856 + -0.4
436,874 + -0.3
436,874 + +1.4
436,880 - -0.8
436,901 + -0.9
436,924 + +1.1
436,929 + +0.1
436,978 - -0.9
437,012 - +1.5
437,031 - PGA1_c04480 0.10 +0.3
437,090 - PGA1_c04480 0.19 -0.0
437,090 - PGA1_c04480 0.19 -0.5
437,090 - PGA1_c04480 0.19 -0.3
437,091 - PGA1_c04480 0.19 -0.6
437,092 + PGA1_c04480 0.19 -1.8
437,100 - PGA1_c04480 0.20 -0.8
437,100 - PGA1_c04480 0.20 -1.0
437,100 - PGA1_c04480 0.20 -1.4
437,104 + PGA1_c04480 0.21 -0.5
437,183 + PGA1_c04480 0.33 -0.3
437,183 + PGA1_c04480 0.33 -1.6
437,183 + PGA1_c04480 0.33 -0.4
437,193 + PGA1_c04480 0.34 -1.5
437,201 - PGA1_c04480 0.36 +0.3
437,201 - PGA1_c04480 0.36 -1.5
437,201 - PGA1_c04480 0.36 -0.6
437,201 - PGA1_c04480 0.36 +0.9
437,201 - PGA1_c04480 0.36 -0.3
437,206 - PGA1_c04480 0.36 -0.9
437,206 - PGA1_c04480 0.36 -0.5
437,243 + PGA1_c04480 0.42 -0.9
437,346 + PGA1_c04480 0.57 +0.4
437,385 - PGA1_c04480 0.63 +0.8
437,455 + PGA1_c04480 0.74 +0.1
437,477 - PGA1_c04480 0.77 +1.1
437,488 + PGA1_c04480 0.79 +0.3
437,498 + PGA1_c04480 0.80 -3.1
437,499 + PGA1_c04480 0.80 -0.0
437,511 + PGA1_c04480 0.82 -1.6
437,561 + PGA1_c04480 0.90 +0.3
437,582 - +0.2
437,582 - -0.2
437,623 + +3.1
437,670 + +0.1
437,670 + +0.5
437,678 + +0.2
437,678 - -0.3
437,712 - -0.7
437,740 - +0.7
437,764 + +0.2
437,764 + -0.8
437,772 - +1.2
437,772 - +0.4
437,772 - -0.5
437,774 + +0.3
437,782 - +0.2
437,799 + +1.9
437,807 - +0.2
437,822 - +1.1
437,825 + +0.8
437,900 + -1.0
437,908 - +1.5
437,977 - +1.5
438,024 + PGA1_c04490 0.11 +0.6
438,141 - PGA1_c04490 0.15 -0.2
438,141 - PGA1_c04490 0.15 -1.0
438,150 - PGA1_c04490 0.15 -2.0
438,161 + PGA1_c04490 0.15 -0.2
438,168 + PGA1_c04490 0.15 +1.1
438,181 + PGA1_c04490 0.16 +1.0
438,183 + PGA1_c04490 0.16 -0.0
438,183 + PGA1_c04490 0.16 -0.3
438,183 + PGA1_c04490 0.16 +0.3
438,183 + PGA1_c04490 0.16 +0.8
438,183 + PGA1_c04490 0.16 +0.7
438,183 + PGA1_c04490 0.16 -0.3
438,183 + PGA1_c04490 0.16 +0.5
438,183 + PGA1_c04490 0.16 +0.9
438,183 + PGA1_c04490 0.16 -0.2
438,183 + PGA1_c04490 0.16 -0.3
438,183 + PGA1_c04490 0.16 +0.4
438,183 + PGA1_c04490 0.16 -0.8
438,183 + PGA1_c04490 0.16 -0.3
438,183 + PGA1_c04490 0.16 -0.9
438,183 + PGA1_c04490 0.16 +0.1
438,183 + PGA1_c04490 0.16 +0.0
438,183 + PGA1_c04490 0.16 +0.4
438,183 + PGA1_c04490 0.16 +0.5
438,183 + PGA1_c04490 0.16 +0.1
438,183 + PGA1_c04490 0.16 +0.9
438,183 + PGA1_c04490 0.16 -0.2
438,183 + PGA1_c04490 0.16 -0.0
438,183 + PGA1_c04490 0.16 +1.7
438,183 + PGA1_c04490 0.16 -0.0
438,183 + PGA1_c04490 0.16 +0.7
438,183 + PGA1_c04490 0.16 +1.0
438,183 + PGA1_c04490 0.16 +1.2
438,183 + PGA1_c04490 0.16 +0.3
438,183 + PGA1_c04490 0.16 +0.8
438,191 - PGA1_c04490 0.16 +2.1
438,191 - PGA1_c04490 0.16 -1.3
438,191 - PGA1_c04490 0.16 -0.1
438,191 - PGA1_c04490 0.16 +0.8
438,191 - PGA1_c04490 0.16 -0.4
438,191 - PGA1_c04490 0.16 +0.5
438,191 - PGA1_c04490 0.16 -0.8
438,191 - PGA1_c04490 0.16 -0.6
438,191 - PGA1_c04490 0.16 +0.9
438,191 - PGA1_c04490 0.16 +0.5
438,191 - PGA1_c04490 0.16 +0.0
438,191 - PGA1_c04490 0.16 +0.8
438,191 - PGA1_c04490 0.16 +0.5
438,191 - PGA1_c04490 0.16 +0.7
438,191 - PGA1_c04490 0.16 +1.3
438,191 - PGA1_c04490 0.16 -0.3
438,191 - PGA1_c04490 0.16 +1.5
438,191 - PGA1_c04490 0.16 +1.0
438,191 - PGA1_c04490 0.16 +0.7
438,191 - PGA1_c04490 0.16 -0.2
438,191 - PGA1_c04490 0.16 +1.5
438,191 - PGA1_c04490 0.16 +0.7
438,191 - PGA1_c04490 0.16 -0.1
438,191 - PGA1_c04490 0.16 +0.1
438,191 - PGA1_c04490 0.16 +0.1
438,191 - PGA1_c04490 0.16 +0.1
438,191 - PGA1_c04490 0.16 +1.1
438,193 + PGA1_c04490 0.16 +0.6
438,193 + PGA1_c04490 0.16 -0.0
438,201 - PGA1_c04490 0.16 +0.4
438,201 - PGA1_c04490 0.16 +0.1
438,262 + PGA1_c04490 0.18 -0.0
438,309 - PGA1_c04490 0.20 -0.2
438,381 + PGA1_c04490 0.22 +1.1
438,409 + PGA1_c04490 0.22 +1.1
438,409 + PGA1_c04490 0.22 +0.5
438,409 + PGA1_c04490 0.22 +0.4
438,428 + PGA1_c04490 0.23 +0.1
438,455 - PGA1_c04490 0.24 +0.5
438,460 - PGA1_c04490 0.24 +0.9
438,460 - PGA1_c04490 0.24 +1.9
438,460 - PGA1_c04490 0.24 +0.5
438,460 - PGA1_c04490 0.24 +1.9
438,460 - PGA1_c04490 0.24 -0.0
438,476 + PGA1_c04490 0.24 +1.3
438,532 - PGA1_c04490 0.26 +1.2
438,558 + PGA1_c04490 0.27 -0.3
438,565 + PGA1_c04490 0.27 +0.4
438,583 + PGA1_c04490 0.28 +1.3
438,583 + PGA1_c04490 0.28 +0.1
438,614 + PGA1_c04490 0.28 -0.3
438,622 - PGA1_c04490 0.29 +1.9

Or see this region's nucleotide sequence