Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4085 and HP15_4086 are separated by 166 nucleotides HP15_4086 and HP15_4087 are separated by 18 nucleotides HP15_4087 and HP15_4088 are separated by 262 nucleotides
HP15_4085: HP15_4085 - protein containing methyltransferase type 12 domain, at 4,317,910 to 4,318,665
_4085
HP15_4086: HP15_4086 - ATPase, ParA family protein, at 4,318,832 to 4,319,572
_4086
HP15_4087: HP15_4087 - transcriptional regulator, GntR family, at 4,319,591 to 4,320,322
_4087
HP15_4088: HP15_4088 - L-lactate dehydrogenase, LutA subunit <small>(from data)</small>, at 4,320,585 to 4,321,424
_4088
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -2
-1
0
1 at 4318.626 kb on - strand at 4318.760 kb on - strand at 4318.765 kb on - strand at 4318.839 kb on - strand at 4318.864 kb on - strand at 4318.923 kb on + strand, within HP15_4086 at 4318.923 kb on + strand, within HP15_4086 at 4318.923 kb on + strand, within HP15_4086 at 4318.931 kb on - strand, within HP15_4086 at 4318.933 kb on + strand, within HP15_4086 at 4318.933 kb on + strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4319.025 kb on - strand, within HP15_4086 at 4319.153 kb on - strand, within HP15_4086 at 4319.192 kb on + strand, within HP15_4086 at 4319.192 kb on + strand, within HP15_4086 at 4319.364 kb on - strand, within HP15_4086 at 4319.399 kb on - strand, within HP15_4086 at 4319.413 kb on + strand, within HP15_4086 at 4319.425 kb on + strand, within HP15_4086 at 4319.566 kb on + strand at 4319.574 kb on - strand at 4319.597 kb on - strand at 4319.676 kb on + strand, within HP15_4087 at 4319.718 kb on - strand, within HP15_4087 at 4319.743 kb on + strand, within HP15_4087 at 4319.745 kb on + strand, within HP15_4087 at 4319.753 kb on - strand, within HP15_4087 at 4320.079 kb on - strand, within HP15_4087 at 4320.225 kb on - strand, within HP15_4087 at 4320.314 kb on - strand at 4320.316 kb on + strand at 4320.358 kb on - strand at 4320.436 kb on - strand at 4320.626 kb on + strand at 4320.626 kb on + strand at 4320.658 kb on + strand at 4320.705 kb on + strand, within HP15_4088 at 4320.801 kb on - strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.841 kb on - strand, within HP15_4088 at 4320.929 kb on + strand, within HP15_4088 at 4321.002 kb on + strand, within HP15_4088 at 4321.005 kb on - strand, within HP15_4088 at 4321.131 kb on - strand, within HP15_4088 at 4321.142 kb on + strand, within HP15_4088
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 4,318,626 - +0.3 4,318,760 - +0.4 4,318,765 - +0.2 4,318,839 - +0.4 4,318,864 - -1.5 4,318,923 + HP15_4086 0.12 +1.2 4,318,923 + HP15_4086 0.12 +0.3 4,318,923 + HP15_4086 0.12 -1.5 4,318,931 - HP15_4086 0.13 -0.3 4,318,933 + HP15_4086 0.14 -1.4 4,318,933 + HP15_4086 0.14 +0.3 4,318,941 - HP15_4086 0.15 +0.5 4,318,941 - HP15_4086 0.15 -0.5 4,318,941 - HP15_4086 0.15 +0.7 4,319,025 - HP15_4086 0.26 +0.4 4,319,153 - HP15_4086 0.43 -1.6 4,319,192 + HP15_4086 0.49 +0.2 4,319,192 + HP15_4086 0.49 -1.6 4,319,364 - HP15_4086 0.72 +0.4 4,319,399 - HP15_4086 0.77 -0.4 4,319,413 + HP15_4086 0.78 +0.2 4,319,425 + HP15_4086 0.80 -0.2 4,319,566 + -0.7 4,319,574 - -1.4 4,319,597 - -0.0 4,319,676 + HP15_4087 0.12 -0.6 4,319,718 - HP15_4087 0.17 -0.8 4,319,743 + HP15_4087 0.21 +1.2 4,319,745 + HP15_4087 0.21 -2.0 4,319,753 - HP15_4087 0.22 -1.0 4,320,079 - HP15_4087 0.67 -1.3 4,320,225 - HP15_4087 0.87 +1.2 4,320,314 - +1.6 4,320,316 + -1.6 4,320,358 - +0.6 4,320,436 - -1.1 4,320,626 + -0.8 4,320,626 + +0.2 4,320,658 + -0.8 4,320,705 + HP15_4088 0.14 +0.7 4,320,801 - HP15_4088 0.26 +1.7 4,320,833 + HP15_4088 0.30 -0.1 4,320,833 + HP15_4088 0.30 +0.5 4,320,841 - HP15_4088 0.30 -1.5 4,320,929 + HP15_4088 0.41 +0.6 4,321,002 + HP15_4088 0.50 +0.3 4,321,005 - HP15_4088 0.50 -1.2 4,321,131 - HP15_4088 0.65 -0.6 4,321,142 + HP15_4088 0.66 +0.6
Or see this region's nucleotide sequence