Strain Fitness in Marinobacter adhaerens HP15 around HP15_4023

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4022 and HP15_4023 are separated by 256 nucleotidesHP15_4023 and HP15_4024 are separated by 382 nucleotidesHP15_4024 and HP15_4025 are separated by 50 nucleotides HP15_4022: HP15_4022 - glycosyl hydrolase, BNR repeat protein, at 4,259,115 to 4,260,107 _4022 HP15_4023: HP15_4023 - helix-turn-helix, Fis-type, at 4,260,364 to 4,262,070 _4023 HP15_4024: HP15_4024 - phenol hydroxylase subunit, at 4,262,453 to 4,262,713 _4024 HP15_4025: HP15_4025 - phenol hydroxylase component, at 4,262,764 to 4,263,765 _4025 Position (kb) 4260 4261 4262 4263Strain fitness (log2 ratio) -2 -1 0 1at 4259.373 kb on + strand, within HP15_4022at 4259.432 kb on + strand, within HP15_4022at 4259.440 kb on - strand, within HP15_4022at 4259.454 kb on + strand, within HP15_4022at 4259.520 kb on + strand, within HP15_4022at 4259.528 kb on - strand, within HP15_4022at 4259.528 kb on - strand, within HP15_4022at 4259.533 kb on - strand, within HP15_4022at 4259.562 kb on - strand, within HP15_4022at 4259.633 kb on + strand, within HP15_4022at 4259.633 kb on + strand, within HP15_4022at 4259.633 kb on + strand, within HP15_4022at 4259.633 kb on + strand, within HP15_4022at 4259.641 kb on - strand, within HP15_4022at 4259.641 kb on - strand, within HP15_4022at 4259.641 kb on - strand, within HP15_4022at 4259.641 kb on - strand, within HP15_4022at 4259.643 kb on + strand, within HP15_4022at 4259.651 kb on - strand, within HP15_4022at 4259.651 kb on - strand, within HP15_4022at 4259.740 kb on + strand, within HP15_4022at 4259.850 kb on - strand, within HP15_4022at 4259.894 kb on + strand, within HP15_4022at 4259.920 kb on + strand, within HP15_4022at 4260.094 kb on + strandat 4260.100 kb on - strandat 4260.184 kb on - strandat 4260.403 kb on + strandat 4260.403 kb on + strandat 4260.411 kb on - strandat 4260.411 kb on - strandat 4260.486 kb on - strandat 4260.589 kb on + strand, within HP15_4023at 4260.892 kb on + strand, within HP15_4023at 4260.900 kb on - strand, within HP15_4023at 4260.900 kb on - strand, within HP15_4023at 4260.945 kb on - strand, within HP15_4023at 4261.022 kb on + strand, within HP15_4023at 4261.088 kb on + strand, within HP15_4023at 4261.098 kb on + strand, within HP15_4023at 4261.166 kb on + strand, within HP15_4023at 4261.176 kb on + strand, within HP15_4023at 4261.191 kb on - strand, within HP15_4023at 4261.198 kb on + strand, within HP15_4023at 4261.213 kb on + strand, within HP15_4023at 4261.221 kb on - strand, within HP15_4023at 4261.295 kb on + strand, within HP15_4023at 4261.367 kb on + strand, within HP15_4023at 4261.372 kb on + strand, within HP15_4023at 4261.375 kb on - strand, within HP15_4023at 4261.430 kb on + strand, within HP15_4023at 4261.457 kb on + strand, within HP15_4023at 4261.612 kb on - strand, within HP15_4023at 4261.680 kb on + strand, within HP15_4023at 4261.754 kb on + strand, within HP15_4023at 4261.784 kb on - strand, within HP15_4023at 4261.844 kb on - strand, within HP15_4023at 4261.901 kb on - strandat 4262.093 kb on + strandat 4262.098 kb on + strandat 4262.106 kb on - strandat 4262.116 kb on + strandat 4262.124 kb on - strandat 4262.313 kb on - strandat 4262.402 kb on - strandat 4262.524 kb on + strand, within HP15_4024at 4262.559 kb on + strand, within HP15_4024at 4262.620 kb on + strand, within HP15_4024at 4262.620 kb on + strand, within HP15_4024at 4262.810 kb on + strandat 4263.008 kb on - strand, within HP15_4025at 4263.064 kb on - strand, within HP15_4025at 4263.064 kb on - strand, within HP15_4025

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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4,259,373 + HP15_4022 0.26 +0.7
4,259,432 + HP15_4022 0.32 -0.9
4,259,440 - HP15_4022 0.33 -0.6
4,259,454 + HP15_4022 0.34 -1.2
4,259,520 + HP15_4022 0.41 -2.1
4,259,528 - HP15_4022 0.42 -2.3
4,259,528 - HP15_4022 0.42 -1.0
4,259,533 - HP15_4022 0.42 -0.0
4,259,562 - HP15_4022 0.45 +0.6
4,259,633 + HP15_4022 0.52 -1.7
4,259,633 + HP15_4022 0.52 -1.6
4,259,633 + HP15_4022 0.52 +0.0
4,259,633 + HP15_4022 0.52 -1.1
4,259,641 - HP15_4022 0.53 -0.1
4,259,641 - HP15_4022 0.53 -0.1
4,259,641 - HP15_4022 0.53 +0.2
4,259,641 - HP15_4022 0.53 -1.4
4,259,643 + HP15_4022 0.53 +0.6
4,259,651 - HP15_4022 0.54 +0.9
4,259,651 - HP15_4022 0.54 +0.9
4,259,740 + HP15_4022 0.63 -0.1
4,259,850 - HP15_4022 0.74 -1.6
4,259,894 + HP15_4022 0.78 -2.3
4,259,920 + HP15_4022 0.81 +0.5
4,260,094 + -1.2
4,260,100 - -0.4
4,260,184 - -0.6
4,260,403 + +0.3
4,260,403 + +1.0
4,260,411 - -0.1
4,260,411 - -0.8
4,260,486 - -1.9
4,260,589 + HP15_4023 0.13 +0.5
4,260,892 + HP15_4023 0.31 -0.6
4,260,900 - HP15_4023 0.31 -1.8
4,260,900 - HP15_4023 0.31 +0.5
4,260,945 - HP15_4023 0.34 +0.8
4,261,022 + HP15_4023 0.39 +0.1
4,261,088 + HP15_4023 0.42 -1.0
4,261,098 + HP15_4023 0.43 +1.1
4,261,166 + HP15_4023 0.47 -1.6
4,261,176 + HP15_4023 0.48 +1.1
4,261,191 - HP15_4023 0.48 +0.1
4,261,198 + HP15_4023 0.49 +0.3
4,261,213 + HP15_4023 0.50 +0.2
4,261,221 - HP15_4023 0.50 +0.3
4,261,295 + HP15_4023 0.55 +1.0
4,261,367 + HP15_4023 0.59 -0.6
4,261,372 + HP15_4023 0.59 -1.1
4,261,375 - HP15_4023 0.59 +0.2
4,261,430 + HP15_4023 0.62 -0.4
4,261,457 + HP15_4023 0.64 -1.0
4,261,612 - HP15_4023 0.73 +1.7
4,261,680 + HP15_4023 0.77 +1.1
4,261,754 + HP15_4023 0.81 +0.8
4,261,784 - HP15_4023 0.83 -0.3
4,261,844 - HP15_4023 0.87 +0.2
4,261,901 - -0.8
4,262,093 + -0.7
4,262,098 + +0.4
4,262,106 - +0.3
4,262,116 + +0.8
4,262,124 - +0.2
4,262,313 - +0.1
4,262,402 - +0.3
4,262,524 + HP15_4024 0.27 -1.2
4,262,559 + HP15_4024 0.41 +0.3
4,262,620 + HP15_4024 0.64 -1.1
4,262,620 + HP15_4024 0.64 -1.6
4,262,810 + -1.0
4,263,008 - HP15_4025 0.24 -1.1
4,263,064 - HP15_4025 0.30 +0.5
4,263,064 - HP15_4025 0.30 +0.5

Or see this region's nucleotide sequence